Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   H2677_RS01375 Genome accession   NZ_CP059558
Coordinates   292474..292965 (+) Length   163 a.a.
NCBI ID   WP_212638999.1    Uniprot ID   A0AAX1MK80
Organism   Acinetobacter junii strain YR7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 287474..297965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS01355 (H2677_01355) - 288789..289679 (+) 891 WP_212638996.1 metal-dependent hydrolase -
  H2677_RS01360 (H2677_01360) - 289860..290450 (+) 591 WP_212638997.1 LemA family protein -
  H2677_RS01365 (H2677_01365) - 290486..291532 (+) 1047 WP_212638998.1 YgcG family protein -
  H2677_RS01370 (H2677_01370) - 291526..292089 (+) 564 WP_125299117.1 TPM domain-containing protein -
  H2677_RS01375 (H2677_01375) pilA 292474..292965 (+) 492 WP_212638999.1 pilin Machinery gene
  H2677_RS01380 (H2677_01380) tfpZ 293063..293797 (+) 735 WP_212639000.1 TfpX/TfpZ family type IV pilin accessory protein -
  H2677_RS01385 (H2677_01385) - 293821..295473 (+) 1653 WP_212639001.1 O-antigen ligase -
  H2677_RS01390 (H2677_01390) - 295826..297457 (+) 1632 WP_212639002.1 PglL family O-oligosaccharyltransferase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 16189.80 Da        Isoelectric Point: 9.5387

>NTDB_id=470582 H2677_RS01375 WP_212638999.1 292474..292965(+) (pilA) [Acinetobacter junii strain YR7]
MKSMQKGFTLIELMIVVAIIGILAAVAIPAYQDYTVRARVSEGLAVASSAKLAVAENAANAKAFASGWTPPQATPNLSSI
SIAPATGQITITTTAAAGNGTLVLVPTANSAASAATPVALVQGTPPAGGNIVWTCYAAGKAASPIAPTVAPTLLAKYAPA
ECR

Nucleotide


Download         Length: 492 bp        

>NTDB_id=470582 H2677_RS01375 WP_212638999.1 292474..292965(+) (pilA) [Acinetobacter junii strain YR7]
ATGAAATCAATGCAAAAGGGTTTTACTCTTATTGAATTAATGATCGTTGTAGCAATCATCGGTATCTTGGCTGCTGTAGC
GATTCCTGCTTACCAAGATTATACTGTTCGTGCTCGCGTATCAGAAGGATTGGCAGTAGCTTCTTCTGCTAAATTAGCTG
TAGCTGAAAATGCAGCAAATGCTAAGGCTTTTGCGAGCGGTTGGACTCCACCACAAGCAACTCCAAACTTGTCTTCAATT
TCAATTGCACCAGCTACTGGTCAAATTACAATCACGACAACTGCAGCAGCTGGTAACGGGACTCTAGTTTTAGTTCCAAC
TGCTAATAGTGCAGCAAGTGCAGCAACACCGGTAGCTTTAGTTCAAGGTACACCACCAGCAGGCGGTAATATTGTTTGGA
CATGCTATGCTGCTGGAAAAGCTGCATCTCCTATTGCTCCAACTGTTGCGCCTACATTATTAGCTAAATATGCACCAGCT
GAATGTCGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Pilin (bacterial filament) (Pilin)

(36-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

58.333

100

0.601
  pilA2 Legionella pneumophila str. Paris

53.659

100

0.54
  pilA2 Legionella pneumophila strain ERS1305867

53.049

100

0.534
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

40.404

100

0.491
  comP Acinetobacter baylyi ADP1

46.25

98.16

0.454