Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H2677_RS01455 Genome accession   NZ_CP059558
Coordinates   310033..310500 (+) Length   155 a.a.
NCBI ID   WP_099948003.1    Uniprot ID   -
Organism   Acinetobacter junii strain YR7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305033..315500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS01445 (H2677_01445) - 305647..306420 (+) 774 WP_125299108.1 PilX N-terminal domain-containing pilus assembly protein -
  H2677_RS01450 (H2677_01450) - 306438..310025 (+) 3588 WP_212639005.1 hypothetical protein -
  H2677_RS01455 (H2677_01455) comE 310033..310500 (+) 468 WP_099948003.1 type IV pilin protein Machinery gene
  H2677_RS01460 (H2677_01460) - 310494..310937 (+) 444 WP_212639006.1 type IV pilin protein -
  H2677_RS01465 (H2677_01465) rpsP 311154..311411 (+) 258 WP_004964546.1 30S ribosomal protein S16 -
  H2677_RS01470 (H2677_01470) rimM 311428..311976 (+) 549 WP_212639007.1 ribosome maturation factor RimM -
  H2677_RS01475 (H2677_01475) trmD 312019..312759 (+) 741 WP_004951622.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H2677_RS01480 (H2677_01480) rplS 312990..313361 (+) 372 WP_004660214.1 50S ribosomal protein L19 -
  H2677_RS01485 (H2677_01485) - 313424..314398 (-) 975 WP_212639008.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16795.19 Da        Isoelectric Point: 9.6568

>NTDB_id=470583 H2677_RS01455 WP_099948003.1 310033..310500(+) (comE) [Acinetobacter junii strain YR7]
MNKNDGFTLIELMVVLIIIAIIAAIAIPSYQSYARRALAAQMQQEMQRISVLLERHKARNFSYKGFDLSTQGVVAPRTYS
FDLKDAATTTTAAKGSGNGKLLSATDASGRSWVLYGITSDAQNYNFLMTSTGLRCKNKTAANVVSTGCGTGEEPW

Nucleotide


Download         Length: 468 bp        

>NTDB_id=470583 H2677_RS01455 WP_099948003.1 310033..310500(+) (comE) [Acinetobacter junii strain YR7]
ATGAACAAAAATGATGGTTTCACCCTGATTGAATTGATGGTAGTTCTTATAATTATTGCGATCATAGCTGCCATCGCAAT
ACCCTCATATCAATCTTATGCTCGACGTGCGCTTGCTGCTCAAATGCAGCAAGAAATGCAACGTATCTCTGTGCTACTAG
AGCGTCATAAAGCACGTAATTTTAGTTACAAGGGCTTCGATCTATCTACTCAAGGTGTTGTTGCACCTCGAACTTATAGC
TTTGATCTAAAGGATGCTGCTACTACTACTACAGCAGCCAAAGGCTCAGGTAATGGTAAATTACTTTCAGCTACTGATGC
CTCAGGACGTTCTTGGGTTTTATATGGAATAACTTCTGATGCTCAAAACTATAACTTTCTAATGACGAGTACTGGCTTAC
GTTGTAAAAATAAAACAGCTGCGAATGTAGTCTCGACAGGATGTGGTACGGGAGAGGAGCCATGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

45.783

100

0.49
  pilY2 Acinetobacter baumannii D1279779

41.875

100

0.432