Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H2677_RS01310 Genome accession   NZ_CP059558
Coordinates   275496..276140 (+) Length   214 a.a.
NCBI ID   WP_004909633.1    Uniprot ID   S7WRY4
Organism   Acinetobacter junii strain YR7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 270496..281140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS01295 (H2677_01295) - 270863..271681 (+) 819 WP_004964610.1 putative RNA methyltransferase -
  H2677_RS01300 (H2677_01300) ponA 271696..274275 (-) 2580 WP_212638994.1 penicillin-binding protein PBP1a -
  H2677_RS01305 (H2677_01305) pilM 274438..275496 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  H2677_RS01310 (H2677_01310) pilN 275496..276140 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  H2677_RS01315 (H2677_01315) pilO 276137..276877 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  H2677_RS01320 (H2677_01320) pilP 276877..277404 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  H2677_RS01325 (H2677_01325) pilQ 277466..279604 (+) 2139 WP_212639560.1 type IV pilus secretin PilQ family protein Machinery gene
  H2677_RS01330 (H2677_01330) aroK 279624..280184 (+) 561 WP_004909618.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23774.17 Da        Isoelectric Point: 5.1372

>NTDB_id=470578 H2677_RS01310 WP_004909633.1 275496..276140(+) (pilN) [Acinetobacter junii strain YR7]
MAKINLLPWRDELREQRKKQFIAYCVGVAALGVASVLAGWGYLDYKLNDQEQANQLIVSTNQNLDAQLKSLDGLQERRNA
IIERMKLIQGLQGQRPVAVRLIDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKTVSSLIPRIEENYGSFVVTVDLGEIGTTVEADPLAETVASGTVGAAQ

Nucleotide


Download         Length: 645 bp        

>NTDB_id=470578 H2677_RS01310 WP_004909633.1 275496..276140(+) (pilN) [Acinetobacter junii strain YR7]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAACGAAAGAAACAATTTATTGCATACTGTGTAGG
GGTTGCTGCATTAGGTGTGGCATCAGTTTTGGCAGGATGGGGTTATCTTGATTACAAATTAAATGATCAAGAACAAGCGA
ACCAACTGATTGTGAGCACAAATCAAAATCTTGATGCTCAATTAAAATCCTTAGATGGCTTGCAAGAGCGACGTAATGCA
ATTATTGAACGGATGAAACTCATTCAAGGATTGCAAGGTCAAAGACCTGTTGCTGTACGTTTAATCGATGAATTGGTGCG
AGTAACTCCGCCAACTATGTATTTGACTAAATTTACACGTACGGGAGATAAGTTCACGATTGAAGGTAAAGCTGAAAGTC
CAAACACAGTAGCTGAATTACTGAGAAATCTTGAAGCATCACCTTGGTATCGCAACGCTTTTATGAATTCCTTTTTAGCG
GCTGAAGAGAAAAAAGACAAAACTGTCAGCTCGCTTATACCTCGTATTGAAGAAAACTATGGAAGTTTTGTTGTAACTGT
TGATCTTGGTGAAATAGGTACAACAGTTGAAGCTGACCCATTAGCAGAAACGGTCGCATCAGGAACAGTGGGGGCAGCAC
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7WRY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.636

100

0.766
  comN Acinetobacter baylyi ADP1

73.333

98.131

0.72