Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   H2677_RS01315 Genome accession   NZ_CP059558
Coordinates   276137..276877 (+) Length   246 a.a.
NCBI ID   WP_075696026.1    Uniprot ID   -
Organism   Acinetobacter junii strain YR7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 271137..281877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS01300 (H2677_01300) ponA 271696..274275 (-) 2580 WP_212638994.1 penicillin-binding protein PBP1a -
  H2677_RS01305 (H2677_01305) pilM 274438..275496 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  H2677_RS01310 (H2677_01310) pilN 275496..276140 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  H2677_RS01315 (H2677_01315) pilO 276137..276877 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  H2677_RS01320 (H2677_01320) pilP 276877..277404 (+) 528 WP_004909624.1 pilus assembly protein PilP Machinery gene
  H2677_RS01325 (H2677_01325) pilQ 277466..279604 (+) 2139 WP_212639560.1 type IV pilus secretin PilQ family protein Machinery gene
  H2677_RS01330 (H2677_01330) aroK 279624..280184 (+) 561 WP_004909618.1 shikimate kinase AroK -
  H2677_RS01335 (H2677_01335) aroB 280205..281287 (+) 1083 WP_212638995.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27775.32 Da        Isoelectric Point: 4.6196

>NTDB_id=470579 H2677_RS01315 WP_075696026.1 276137..276877(+) (pilO) [Acinetobacter junii strain YR7]
MSQEELNELNQDVAVKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKVTCWIFVFLAVLALGYFVVIKSQLERIANEEAKEQ
SLLNEFREKDSKLRNLQRYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQPI
SIEATGDYHAFGAFATGIAALPRIVTLHDFTVEASQDTTKKSDIPVVNYSVKAKTYRYVGADDAANTEVGAAVPPQNNPP
SQGGTN

Nucleotide


Download         Length: 741 bp        

>NTDB_id=470579 H2677_RS01315 WP_075696026.1 276137..276877(+) (pilO) [Acinetobacter junii strain YR7]
ATGAGTCAAGAAGAATTAAATGAACTCAACCAAGATGTTGCTGTAAAGAAAAAGAAAATGACAGTAGAGCAATTCTTTCA
GCAATTTAATACGCTTGATATGAATAATTACGGTAGCTGGCCGCTATCTGTAAAAGTGACATGTTGGATTTTTGTTTTTT
TAGCTGTTTTAGCGCTTGGTTACTTTGTTGTTATTAAATCTCAACTTGAGCGTATTGCTAATGAGGAGGCTAAAGAGCAA
AGTTTATTGAATGAATTTAGAGAGAAAGACTCTAAATTGCGTAATTTGCAGCGTTACCAAGCTCAGTTACAAGAAATGGA
AGCTAATTTTAATCAGCAACTAGAACAATTGCCGAAAGAAACTGAGATTCCAAGTTTGGTTGAAGATATTAACTTGACAG
GTGTAAATTCGGGGTTGAAGTTTAAAAACATTCGCTTGGAAAATGAGGTTAAGCAAGAATTCTTTATTGAACAACCGATT
AGTATAGAAGCAACTGGCGATTATCATGCATTTGGAGCATTTGCTACAGGCATTGCGGCATTGCCTCGAATTGTAACTTT
ACACGATTTCACGGTTGAAGCATCACAAGATACGACGAAGAAGTCAGATATTCCTGTTGTGAATTACTCCGTTAAGGCAA
AAACCTACCGTTATGTGGGTGCTGATGATGCAGCAAATACTGAGGTTGGAGCGGCGGTACCTCCTCAGAATAATCCACCT
AGTCAAGGAGGAACTAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.065

100

0.724
  comO Acinetobacter baylyi ADP1

73.043

93.496

0.683