Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   H2677_RS01805 Genome accession   NZ_CP059558
Coordinates   377934..378593 (-) Length   219 a.a.
NCBI ID   WP_129261571.1    Uniprot ID   A0AAX1MJ68
Organism   Acinetobacter junii strain YR7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 372934..383593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS01770 (H2677_01770) - 373590..374264 (+) 675 WP_004909422.1 outer membrane lipid asymmetry maintenance protein MlaD -
  H2677_RS01775 (H2677_01775) - 374284..374916 (+) 633 WP_004909421.1 phospholipid-binding protein MlaC -
  H2677_RS01780 (H2677_01780) - 374928..375215 (+) 288 WP_004964385.1 lipid asymmetry maintenance protein MlaB -
  H2677_RS01785 (H2677_01785) - 375346..375798 (-) 453 WP_228301660.1 hypothetical protein -
  H2677_RS01790 (H2677_01790) - 375800..376813 (-) 1014 WP_004909415.1 magnesium and cobalt transport protein CorA -
  H2677_RS01795 (H2677_01795) - 376964..377548 (+) 585 WP_125299073.1 TIGR00730 family Rossman fold protein -
  H2677_RS01800 (H2677_01800) - 377558..377944 (+) 387 WP_004909413.1 NUDIX domain-containing protein -
  H2677_RS01805 (H2677_01805) comF 377934..378593 (-) 660 WP_129261571.1 ComF family protein Machinery gene
  H2677_RS01810 (H2677_01810) recG 378586..380631 (-) 2046 WP_212639030.1 ATP-dependent DNA helicase RecG -
  H2677_RS01815 (H2677_01815) - 380651..381469 (+) 819 WP_212639031.1 NAD-dependent epimerase/dehydratase family protein -
  H2677_RS01820 (H2677_01820) - 381594..382574 (+) 981 WP_099948039.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25034.27 Da        Isoelectric Point: 8.7948

>NTDB_id=470584 H2677_RS01805 WP_129261571.1 377934..378593(-) (comF) [Acinetobacter junii strain YR7]
MFKLLSRGAQQVADYFTACHLCDIGVRAQYGVCQSCWQQLPWLKHKIERHQQDILIACHYEYPISQLIQQFKYEQQLHHL
RLLSGLLLELKLPKVHAIVPMPISNDRLMERGFNQSLLIAKELSKVLNIPVWQPVQRLAQHSQKGLSRLERLENIEDQFV
AKTHLQLIYRKVLIIDDVVTTGSSINALSQVLKQLGCQHIYSACLAAGGVKQANHDVIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=470584 H2677_RS01805 WP_129261571.1 377934..378593(-) (comF) [Acinetobacter junii strain YR7]
ATGTTTAAATTATTGAGCCGAGGAGCACAACAAGTTGCTGATTATTTCACAGCATGTCACTTATGCGATATTGGTGTCAG
AGCACAATATGGTGTTTGTCAAAGTTGCTGGCAACAATTACCATGGTTAAAACATAAAATCGAACGACATCAGCAAGATA
TACTTATTGCCTGTCATTATGAATATCCGATCAGCCAACTCATTCAACAATTTAAATACGAGCAACAGTTACATCATCTT
CGATTACTTAGCGGACTATTACTGGAACTTAAGCTGCCAAAAGTACATGCCATCGTACCAATGCCTATTTCAAATGATCG
ACTGATGGAAAGAGGTTTCAATCAATCACTTTTAATCGCTAAGGAACTGAGCAAAGTATTGAATATTCCAGTATGGCAGC
CCGTGCAACGACTAGCCCAACATTCTCAAAAAGGTTTAAGCCGCTTAGAGCGACTGGAAAATATAGAAGATCAATTTGTC
GCTAAAACACATCTTCAATTGATTTATAGAAAAGTGCTGATTATTGATGATGTCGTGACCACAGGCAGCTCTATCAATGC
CCTCAGTCAAGTATTAAAACAGTTGGGGTGCCAACATATATACTCAGCCTGTTTAGCCGCTGGTGGTGTTAAACAGGCAA
ATCATGATGTTATTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

64.115

95.434

0.612
  comF Acinetobacter baumannii D1279779

63.636

95.434

0.607