Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   H1R75_RS06400 Genome accession   NZ_CP059471
Coordinates   1246005..1247978 (-) Length   657 a.a.
NCBI ID   WP_074483622.1    Uniprot ID   -
Organism   Streptococcus equinus strain MDC1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1241005..1252978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS06380 (H1R75_06380) amiF 1241512..1242438 (-) 927 WP_021142590.1 ATP-binding cassette domain-containing protein Regulator
  H1R75_RS06385 (H1R75_06385) amiE 1242431..1243501 (-) 1071 WP_021142591.1 ABC transporter ATP-binding protein Regulator
  H1R75_RS06390 (H1R75_06390) amiD 1243510..1244427 (-) 918 WP_182001840.1 oligopeptide ABC transporter permease OppC Regulator
  H1R75_RS06395 (H1R75_06395) amiC 1244435..1245937 (-) 1503 WP_182001205.1 ABC transporter permease Regulator
  H1R75_RS06400 (H1R75_06400) amiA 1246005..1247978 (-) 1974 WP_074483622.1 peptide ABC transporter substrate-binding protein Regulator
  H1R75_RS06405 (H1R75_06405) - 1248334..1248669 (-) 336 WP_182001206.1 metal-sulfur cluster assembly factor -
  H1R75_RS06410 (H1R75_06410) rpoD 1248691..1249800 (-) 1110 WP_024343868.1 RNA polymerase sigma factor RpoD -
  H1R75_RS06415 (H1R75_06415) dnaG 1249809..1251617 (-) 1809 WP_328804834.1 DNA primase -
  H1R75_RS06420 (H1R75_06420) mscL 1251735..1252118 (+) 384 WP_021142600.1 large conductance mechanosensitive channel protein MscL -
  H1R75_RS06425 (H1R75_06425) rpsU 1252180..1252356 (-) 177 WP_000048058.1 30S ribosomal protein S21 -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 73300.13 Da        Isoelectric Point: 5.3717

>NTDB_id=469838 H1R75_RS06400 WP_074483622.1 1246005..1247978(-) (amiA) [Streptococcus equinus strain MDC1]
MFMKKYLTVAGVALLSVSLLQGCSNSKSTKQKSNVYSYVYVSDPNTLDYTVSGRATTSSVTTQGIDGLLENDKYGNLVPS
LAKDWKVSADGLTYTYKLRKGVMWYTSDGEEYAEVTANDFVTGLKHAADKKSDALYIVQNSIKGLDDYVSGATKDFSTVG
VKALDKYTVQYTLNKPETYWNSKTTYGVLQPVNKDFLKAKGKDFGSVDPSSILYNGPFILKSLTSKSSIEFDKNENYWDA
KHVKLDGVKLTYFDGSDPESLYKNFEKGNYSCSRLYPTKPGFKKIEKNHKNEINYSLQDQSTYFVVFNLNRKAYDFTSKN
SDTQKNDTHEAILNKDFRQAVTFAFNRAAYNSQNVGQEASTKSLRSMFVPPKFVSSDGKDFGDYVKDELGDNATWKDVDF
SDAKDGLYNVDKAKAAFSKAKSTLQSEGVQFPIHLDFPVDQTSDITTQQANSFKQSVEASLGKDNVVVDIQKESEEDYQR
TGYFAESADQKDYDLSQDSGWSPDYDDPSTYLDILNSDTGTSIKNSGIDSSTDEGKEVAQRVGLDQFNKLVTDANNVTDD
ITARYTDYAKAQAWLTDSAIIIPTTSLGGTPSVSKVVPFSASYSTSGIKGSDCYKYYQLQDKPVTVKQYKKALDGWKKAK
DKSNTEYQEKLSEHIEK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=469838 H1R75_RS06400 WP_074483622.1 1246005..1247978(-) (amiA) [Streptococcus equinus strain MDC1]
ATGTTTATGAAAAAATATTTAACTGTCGCAGGAGTTGCACTTTTATCGGTTTCGCTTTTACAAGGATGTTCTAATTCAAA
ATCGACAAAGCAAAAATCAAATGTTTATTCTTATGTCTATGTTTCTGATCCGAATACACTAGATTATACAGTATCAGGCC
GAGCAACTACATCATCTGTAACAACTCAGGGAATAGATGGTTTGCTAGAGAATGATAAATACGGTAATTTAGTGCCTTCT
CTTGCAAAAGATTGGAAAGTTTCAGCTGATGGTTTAACTTATACCTATAAGCTGAGAAAAGGCGTTATGTGGTACACTTC
TGATGGTGAAGAATATGCAGAAGTTACGGCGAATGATTTTGTTACAGGATTAAAGCATGCAGCTGATAAGAAATCAGACG
CCCTTTACATTGTGCAAAATTCAATAAAAGGTTTGGATGATTATGTTAGTGGTGCTACAAAAGATTTTTCAACTGTTGGC
GTTAAGGCGTTAGATAAATATACTGTCCAGTATACTTTGAATAAACCTGAAACCTATTGGAATTCTAAGACGACCTATGG
TGTACTTCAACCAGTTAATAAAGATTTCTTGAAGGCAAAGGGTAAAGATTTTGGTTCTGTAGATCCATCTAGTATTCTTT
ATAATGGTCCGTTTATTTTGAAATCTTTGACTTCTAAATCTTCAATCGAATTTGATAAAAATGAAAATTATTGGGATGCT
AAGCACGTAAAACTTGATGGGGTTAAACTAACTTATTTTGATGGTTCAGATCCAGAATCTCTTTATAAAAATTTTGAAAA
AGGAAATTACAGCTGTTCAAGACTATACCCAACCAAACCAGGTTTCAAGAAAATTGAAAAGAACCATAAAAATGAAATTA
ATTACTCATTACAGGATCAATCAACCTATTTCGTTGTCTTTAATTTGAATCGTAAAGCTTATGATTTTACTTCAAAAAAC
AGTGATACTCAAAAAAATGATACCCATGAAGCTATTTTAAATAAAGACTTCCGTCAAGCTGTTACTTTTGCTTTTAACAG
AGCAGCCTACAATTCACAAAATGTTGGTCAAGAGGCTTCAACTAAATCACTTCGTAGTATGTTTGTACCACCAAAATTTG
TGTCTTCTGATGGTAAGGATTTTGGTGATTATGTTAAAGATGAGTTAGGCGATAATGCAACTTGGAAAGATGTTGATTTT
TCAGATGCTAAAGATGGATTATACAATGTTGATAAGGCAAAAGCGGCATTTTCTAAAGCAAAATCTACATTGCAAAGTGA
GGGTGTTCAATTTCCAATCCACTTAGATTTTCCTGTAGATCAAACAAGTGATATTACGACACAACAAGCTAATTCATTTA
AGCAATCTGTGGAAGCATCACTCGGTAAGGATAACGTCGTTGTTGATATTCAAAAAGAAAGTGAAGAAGATTATCAACGT
ACAGGATATTTTGCAGAATCAGCTGATCAAAAGGATTACGATTTGTCTCAAGACTCTGGATGGAGTCCCGATTATGATGA
TCCTTCTACTTATCTTGATATCTTAAATTCAGATACAGGTACTTCAATTAAGAATAGTGGTATTGATTCATCAACTGATG
AAGGTAAAGAAGTTGCACAAAGAGTAGGATTGGATCAGTTCAATAAATTAGTTACAGATGCAAATAATGTTACTGATGAT
ATAACTGCCCGTTATACAGATTATGCAAAAGCTCAAGCATGGTTGACGGATAGCGCTATCATTATACCAACAACATCTTT
AGGTGGTACCCCATCAGTTTCAAAAGTCGTTCCATTTTCGGCTTCTTATTCAACATCTGGAATTAAAGGTAGTGACTGTT
ACAAATATTATCAATTGCAAGATAAGCCTGTTACGGTTAAACAATACAAAAAAGCTTTAGATGGTTGGAAAAAGGCCAAA
GATAAATCAAACACAGAATATCAAGAAAAGCTTTCTGAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

53.544

100

0.54
  amiA3 Streptococcus thermophilus LMG 18311

51.506

100

0.521
  amiA3 Streptococcus thermophilus LMD-9

51.054

100

0.516