Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   H1R75_RS06390 Genome accession   NZ_CP059471
Coordinates   1243510..1244427 (-) Length   305 a.a.
NCBI ID   WP_182001840.1    Uniprot ID   -
Organism   Streptococcus equinus strain MDC1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238510..1249427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS06370 (H1R75_06370) - 1239265..1240200 (-) 936 WP_182001204.1 glycosyltransferase family 2 protein -
  H1R75_RS06375 (H1R75_06375) cps2T 1240190..1241344 (-) 1155 WP_027968585.1 beta 1-4 rhamnosyltransferase Cps2T -
  H1R75_RS06380 (H1R75_06380) amiF 1241512..1242438 (-) 927 WP_021142590.1 ATP-binding cassette domain-containing protein Regulator
  H1R75_RS06385 (H1R75_06385) amiE 1242431..1243501 (-) 1071 WP_021142591.1 ABC transporter ATP-binding protein Regulator
  H1R75_RS06390 (H1R75_06390) amiD 1243510..1244427 (-) 918 WP_182001840.1 oligopeptide ABC transporter permease OppC Regulator
  H1R75_RS06395 (H1R75_06395) amiC 1244435..1245937 (-) 1503 WP_182001205.1 ABC transporter permease Regulator
  H1R75_RS06400 (H1R75_06400) amiA 1246005..1247978 (-) 1974 WP_074483622.1 peptide ABC transporter substrate-binding protein Regulator
  H1R75_RS06405 (H1R75_06405) - 1248334..1248669 (-) 336 WP_182001206.1 metal-sulfur cluster assembly factor -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 34619.62 Da        Isoelectric Point: 8.8366

>NTDB_id=469836 H1R75_RS06390 WP_182001840.1 1243510..1244427(-) (amiD) [Streptococcus equinus strain MDC1]
MDKKQFEFVSLDSSASEIIDAPTYSYWKSVFKQFFSKKSTFFMLAILIAIIFMSFVYPFFVHCNFNDVSNINDFSKRYVW
PNSQYWFGTDKDGRSLFDCVWYGARNSILISVLATVINMILGVVIGGIWGVSKTVDTIMIEVYNVVSNIPQLLIIMVLTY
SLGAGFWNMILAFCITGWIGIAYSIRVQILRYRDLEYNLASQILGTSKFRIVVKNLLPQLISVIVTMVSQLLPSYISYEA
FLSYFGIGLPISVPSLGRLISNYSSNLTTNAYLFWIPLTVLVLVSLPLYIIGQNLADASDPRTHR

Nucleotide


Download         Length: 918 bp        

>NTDB_id=469836 H1R75_RS06390 WP_182001840.1 1243510..1244427(-) (amiD) [Streptococcus equinus strain MDC1]
ATTGATAAGAAACAATTTGAATTTGTTAGTTTAGATAGTTCAGCTTCAGAAATTATCGATGCTCCAACTTATTCTTATTG
GAAATCTGTTTTTAAACAATTTTTCTCTAAAAAATCTACTTTCTTTATGTTAGCAATATTGATTGCAATCATTTTTATGA
GTTTTGTCTATCCATTCTTTGTTCATTGTAATTTTAATGATGTCAGTAATATTAATGACTTTTCGAAACGTTATGTTTGG
CCGAATAGTCAGTATTGGTTTGGTACGGATAAAGATGGTAGATCTTTATTTGATTGTGTATGGTACGGTGCTAGAAATTC
TATTTTAATTTCTGTTTTAGCAACAGTTATTAATATGATTTTAGGGGTTGTTATTGGTGGCATATGGGGTGTCTCAAAGA
CAGTTGATACCATTATGATTGAGGTATATAACGTTGTCTCTAATATTCCTCAGTTGTTAATTATTATGGTCTTAACCTAT
TCTTTGGGTGCAGGTTTTTGGAATATGATACTTGCATTCTGTATTACAGGATGGATTGGAATTGCTTATTCGATTCGTGT
CCAAATCTTACGTTATCGTGATTTAGAATACAATCTTGCTAGTCAAATTTTAGGAACATCAAAATTTAGAATTGTTGTTA
AGAATTTATTGCCACAACTGATTTCTGTAATTGTGACTATGGTATCTCAGTTATTACCATCCTACATTTCATATGAAGCT
TTTCTTTCTTATTTTGGTATTGGGCTTCCAATTTCAGTTCCAAGTCTAGGACGTTTAATTTCAAATTATTCCTCTAATTT
AACGACTAATGCTTACTTATTTTGGATTCCTCTGACGGTTTTGGTATTGGTATCTTTGCCGTTATATATCATTGGGCAAA
ATCTTGCTGATGCAAGTGATCCAAGGACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(122-303)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(25-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

71.475

100

0.715
  amiD Streptococcus thermophilus LMG 18311

70.492

100

0.705
  amiD Streptococcus thermophilus LMD-9

70.492

100

0.705