Detailed information NTG0469837

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JSQ86_RS05510
• Genome accession: NZ_CP069707
• Coordinates: 1133047..1134039 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain E41
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1128047..1139039

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JSQ86_RS05480 (JSQ86_05480)	ispD	1128108..1128818 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JSQ86_RS05485 (JSQ86_05485)	ispF	1128818..1129297 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JSQ86_RS05490 (JSQ86_05490)	truD	1129294..1130343 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JSQ86_RS05495 (JSQ86_05495)	surE	1130324..1131085 (+)	762	WP_204098150.1	5'/3'-nucleotidase SurE	-
JSQ86_RS05500 (JSQ86_05500)	pcm	1131079..1131705 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JSQ86_RS05505 (JSQ86_05505)	nlpD	1131890..1132984 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
JSQ86_RS05510 (JSQ86_05510)	rpoS	1133047..1134039 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JSQ86_RS05515 (JSQ86_05515)	ygbN	1134133..1135497 (-)	1365	WP_000104441.1	GntP family transporter	-
JSQ86_RS05520 (JSQ86_05520)	ygbM	1135586..1136362 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
JSQ86_RS05525 (JSQ86_05525)	ygbL	1136367..1137005 (-)	639	WP_001278994.1	aldolase	-
JSQ86_RS05530 (JSQ86_05530)	otnK	1137002..1138264 (-)	1263	WP_204098151.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=469837 JSQ86_RS05510 WP_000081550.1 1133047..1134039(+) (rpoS) [Escherichia coli strain E41]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=469837 JSQ86_RS05510 WP_000081550.1 1133047..1134039(+) (rpoS) [Escherichia coli strain E41]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715