Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H1R75_RS06395 Genome accession   NZ_CP059471
Coordinates   1244435..1245937 (-) Length   500 a.a.
NCBI ID   WP_182001205.1    Uniprot ID   -
Organism   Streptococcus equinus strain MDC1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1239435..1250937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS06375 (H1R75_06375) cps2T 1240190..1241344 (-) 1155 WP_027968585.1 beta 1-4 rhamnosyltransferase Cps2T -
  H1R75_RS06380 (H1R75_06380) amiF 1241512..1242438 (-) 927 WP_021142590.1 ATP-binding cassette domain-containing protein Regulator
  H1R75_RS06385 (H1R75_06385) amiE 1242431..1243501 (-) 1071 WP_021142591.1 ABC transporter ATP-binding protein Regulator
  H1R75_RS06390 (H1R75_06390) amiD 1243510..1244427 (-) 918 WP_182001840.1 oligopeptide ABC transporter permease OppC Regulator
  H1R75_RS06395 (H1R75_06395) amiC 1244435..1245937 (-) 1503 WP_182001205.1 ABC transporter permease Regulator
  H1R75_RS06400 (H1R75_06400) amiA 1246005..1247978 (-) 1974 WP_074483622.1 peptide ABC transporter substrate-binding protein Regulator
  H1R75_RS06405 (H1R75_06405) - 1248334..1248669 (-) 336 WP_182001206.1 metal-sulfur cluster assembly factor -
  H1R75_RS06410 (H1R75_06410) rpoD 1248691..1249800 (-) 1110 WP_024343868.1 RNA polymerase sigma factor RpoD -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 55980.73 Da        Isoelectric Point: 10.2572

>NTDB_id=469837 H1R75_RS06395 WP_182001205.1 1244435..1245937(-) (amiC) [Streptococcus equinus strain MDC1]
MKKYVGMRILRSLVSILLVTTLTYGIIYALVPRHLIFRQDPNYNKMVTTADKRINYENQIYSKTGYIEYKDSKDLSKIAS
TIDSKVTVDNTKKNKKIYQDCVDKLGKGWKLYQFPESKKFYAVREIPLYERVLKFYSNLIVIDHPWKIKDSSNPNLKRYV
RFENDPAIGPALVGSGTEHKYLIYFNGAFPFVHQHIVTMNLGISYPTYANVPILQVINQGQGKAKLKEVKFPTGKTKISS
VDIYTRTYKSPKEADAMAVNNFGKGDAYTATRSIYSDPSMVSNSVRIGVIGVLISYLLGLPIGLLMARFKNGFFDRFSTG
IVTFLLAVPSIAIIYAIRFIGSAIGLPDAFPTLGAHDWRSYVLPAFILGFLSIPGIVVWFRRYVVDLQNSDFVKFARSKG
LSENEISKKHLFQQAMVPIVNGIPEAILGTIVGATLTETIFAFPGMGKMLIDSIKATNNSMVVGLVFLFTSLSIISLLLG
DLLMVILDPRIKLSSKGGKK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=469837 H1R75_RS06395 WP_182001205.1 1244435..1245937(-) (amiC) [Streptococcus equinus strain MDC1]
ATGAAAAAATATGTTGGAATGCGAATTCTGCGTTCGCTGGTATCGATTTTATTAGTAACGACATTAACTTACGGCATTAT
ATACGCTTTAGTACCGAGACACCTCATTTTTAGACAAGATCCTAATTATAATAAAATGGTGACAACAGCTGACAAGCGAA
TTAATTATGAAAATCAAATTTATAGTAAGACAGGTTATATTGAGTACAAAGATAGTAAAGATTTAAGTAAGATTGCTTCT
ACAATAGATAGTAAAGTCACCGTTGATAATACCAAAAAGAATAAAAAAATTTATCAAGATTGTGTCGATAAACTTGGAAA
AGGATGGAAACTTTACCAGTTTCCAGAAAGTAAAAAATTTTATGCAGTACGCGAAATTCCACTCTACGAAAGAGTGCTGA
AATTTTACTCTAATTTGATTGTGATTGATCATCCTTGGAAGATTAAGGATTCATCTAATCCAAATTTAAAACGCTATGTT
CGGTTTGAAAATGATCCTGCAATAGGTCCAGCTTTGGTTGGTTCAGGAACGGAGCATAAGTACTTGATTTACTTTAATGG
TGCCTTTCCATTTGTTCATCAACATATTGTGACGATGAATCTTGGTATTTCTTATCCAACTTATGCTAATGTGCCGATTT
TACAAGTAATTAATCAAGGTCAAGGGAAAGCAAAATTAAAAGAAGTTAAATTCCCAACGGGTAAAACTAAAATAAGTTCG
GTAGATATCTATACACGAACTTACAAATCACCTAAAGAAGCTGATGCAATGGCAGTCAATAATTTTGGAAAGGGTGATGC
TTATACTGCGACAAGAAGTATTTACTCAGATCCTTCAATGGTGTCCAATTCAGTTCGAATTGGTGTAATCGGTGTACTTA
TTTCATACTTGTTAGGGTTACCGATTGGACTTTTAATGGCTAGATTTAAGAATGGTTTTTTTGATCGTTTTTCAACAGGC
ATTGTTACGTTTTTGCTAGCTGTTCCTAGTATTGCTATTATTTATGCGATTCGTTTTATTGGTTCAGCGATTGGGTTACC
AGATGCTTTCCCAACTCTAGGAGCTCACGATTGGCGATCTTATGTATTGCCAGCATTTATTTTAGGATTTTTGAGTATTC
CAGGGATTGTCGTTTGGTTTAGACGTTATGTTGTTGATTTACAAAATAGTGATTTTGTGAAATTCGCTAGATCGAAAGGA
TTATCTGAAAACGAAATTTCGAAGAAACACTTATTTCAGCAAGCTATGGTTCCGATTGTTAATGGGATACCAGAGGCTAT
TTTAGGGACAATTGTAGGAGCTACTTTGACTGAAACGATTTTTGCTTTTCCTGGTATGGGGAAAATGTTGATTGATTCAA
TCAAGGCCACTAATAACTCGATGGTTGTAGGTTTAGTTTTCTTATTTACCAGTTTATCAATTATTTCTCTCTTGCTAGGT
GACCTTTTAATGGTTATATTGGACCCTCGAATTAAGTTATCATCAAAAGGAGGTAAAAAATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

63.527

99.8

0.634
  amiC Streptococcus thermophilus LMG 18311

63.527

99.8

0.634
  amiC Streptococcus salivarius strain HSISS4

63.327

99.8

0.632