Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   H1R75_RS06380 Genome accession   NZ_CP059471
Coordinates   1241512..1242438 (-) Length   308 a.a.
NCBI ID   WP_021142590.1    Uniprot ID   A0A239RDH6
Organism   Streptococcus equinus strain MDC1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1236512..1247438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS06360 (H1R75_06360) - 1237233..1238462 (-) 1230 WP_182001202.1 ABC transporter ATP-binding protein -
  H1R75_RS06365 (H1R75_06365) - 1238462..1239268 (-) 807 WP_182001203.1 ABC transporter permease -
  H1R75_RS06370 (H1R75_06370) - 1239265..1240200 (-) 936 WP_182001204.1 glycosyltransferase family 2 protein -
  H1R75_RS06375 (H1R75_06375) cps2T 1240190..1241344 (-) 1155 WP_027968585.1 beta 1-4 rhamnosyltransferase Cps2T -
  H1R75_RS06380 (H1R75_06380) amiF 1241512..1242438 (-) 927 WP_021142590.1 ATP-binding cassette domain-containing protein Regulator
  H1R75_RS06385 (H1R75_06385) amiE 1242431..1243501 (-) 1071 WP_021142591.1 ABC transporter ATP-binding protein Regulator
  H1R75_RS06390 (H1R75_06390) amiD 1243510..1244427 (-) 918 WP_182001840.1 oligopeptide ABC transporter permease OppC Regulator
  H1R75_RS06395 (H1R75_06395) amiC 1244435..1245937 (-) 1503 WP_182001205.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 35282.49 Da        Isoelectric Point: 6.2487

>NTDB_id=469834 H1R75_RS06380 WP_021142590.1 1241512..1242438(-) (amiF) [Streptococcus equinus strain MDC1]
MPEKLVDIRNLEISFGEGSKKFTAVKNANFFINKGETFSLVGESGSGKTTIARAIVGLNETSAGEIIFEGKRINTRLSKA
EKGNLIQKIQMIFQDPAASLNERATVDYIISEGLYNFKLYKDEEERRQKVREIIEKVGLLPEHLTRYPHEFSGGQRQRIG
IARTLVMNPEFIIADEPISALDVSVRAQVLNLLKEIQRENGMTYLFIAHDLSVVRFISDRIAVIHQGVIVEIAETEELFH
HPIHPYTKSLLSAVPIPDPILERQKELVVYDPEQHDYTVDKPRMFEIKPNHFIWANQEEIKKYQQELL

Nucleotide


Download         Length: 927 bp        

>NTDB_id=469834 H1R75_RS06380 WP_021142590.1 1241512..1242438(-) (amiF) [Streptococcus equinus strain MDC1]
ATGCCTGAAAAATTAGTAGATATTCGAAATTTAGAAATCTCATTTGGGGAGGGAAGTAAGAAATTTACTGCTGTAAAAAA
TGCGAATTTCTTTATCAACAAAGGAGAGACGTTCTCACTTGTTGGAGAATCAGGAAGTGGAAAAACAACGATTGCACGAG
CAATAGTAGGTCTTAATGAGACAAGTGCTGGAGAAATTATTTTTGAAGGTAAGAGAATCAATACGAGATTGAGTAAGGCT
GAAAAAGGAAATCTTATTCAAAAAATTCAGATGATATTTCAGGATCCAGCAGCTAGTTTAAATGAGCGAGCAACAGTAGA
TTATATCATTTCTGAAGGTCTTTATAATTTTAAATTATACAAAGACGAAGAAGAACGTAGACAAAAAGTTAGAGAAATTA
TTGAAAAGGTAGGTTTGTTACCAGAACATTTAACACGATATCCTCATGAATTTTCAGGGGGACAACGACAACGTATTGGA
ATTGCAAGAACGCTTGTAATGAATCCAGAATTTATTATAGCTGATGAACCAATTTCGGCTTTGGATGTTTCGGTTAGAGC
GCAGGTACTTAATTTGTTGAAAGAGATTCAAAGAGAAAATGGTATGACATATTTGTTTATCGCGCACGATCTGTCAGTTG
TACGTTTCATTTCTGATCGTATTGCAGTTATTCATCAAGGGGTGATTGTTGAAATTGCTGAAACTGAGGAGTTATTTCAT
CATCCTATTCACCCTTACACTAAATCTCTGTTGTCTGCAGTTCCTATTCCAGATCCAATCTTAGAACGCCAAAAAGAATT
AGTTGTCTACGATCCGGAACAACATGATTATACAGTTGACAAGCCTCGGATGTTTGAAATAAAACCCAATCATTTTATTT
GGGCTAATCAAGAAGAAATTAAAAAGTATCAACAAGAGTTATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239RDH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

78.758

99.351

0.782
  amiF Streptococcus thermophilus LMG 18311

78.431

99.351

0.779
  amiF Streptococcus salivarius strain HSISS4

77.778

99.351

0.773