Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FOLKNPGA_RS05735 Genome accession   NZ_CP059400
Coordinates   1313792..1315897 (+) Length   701 a.a.
NCBI ID   WP_182352091.1    Uniprot ID   -
Organism   Legionella sp. PC1000     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1308792..1320897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOLKNPGA_RS05710 (FOLKNPGA_01171) - 1309645..1310781 (-) 1137 WP_182352086.1 hypothetical protein -
  FOLKNPGA_RS05715 (FOLKNPGA_01172) pilM 1311026..1312090 (+) 1065 WP_182352087.1 pilus assembly protein PilM Machinery gene
  FOLKNPGA_RS05720 (FOLKNPGA_01173) pilN 1312097..1312672 (+) 576 WP_182352088.1 PilN domain-containing protein Machinery gene
  FOLKNPGA_RS05725 (FOLKNPGA_01174) pilO 1312669..1313268 (+) 600 WP_182352089.1 type 4a pilus biogenesis protein PilO Machinery gene
  FOLKNPGA_RS05730 (FOLKNPGA_01175) pilP 1313265..1313783 (+) 519 WP_182352090.1 pilus assembly protein PilP Machinery gene
  FOLKNPGA_RS05735 (FOLKNPGA_01176) pilQ 1313792..1315897 (+) 2106 WP_182352091.1 type IV pilus secretin PilQ Machinery gene
  FOLKNPGA_RS05740 (FOLKNPGA_01177) aroK 1316428..1316955 (+) 528 WP_010653139.1 shikimate kinase AroK -
  FOLKNPGA_RS05745 (FOLKNPGA_01178) aroB 1316942..1318054 (+) 1113 WP_182352092.1 3-dehydroquinate synthase -
  FOLKNPGA_RS05750 (FOLKNPGA_01179) - 1318047..1319510 (+) 1464 WP_182352093.1 SPOR domain-containing protein -
  FOLKNPGA_RS05755 (FOLKNPGA_01180) proC 1319589..1320425 (-) 837 WP_182352094.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 77395.78 Da        Isoelectric Point: 10.0020

>NTDB_id=469374 FOLKNPGA_RS05735 WP_182352091.1 1313792..1315897(+) (pilQ) [Legionella sp. PC1000]
MRRIVALFILMTMSFGMAFAQNNPLISVKVIPLPLGKLRIDFEFAQPIKREPASFVTPNPARIVLDFIDSNLELPSKQKT
KEIKLGSLDKYTIVAVGPRVRAILDLNYPVPYLGSISGNVYTLILNGKREESIQPPKELLITNRPVRTSYEINHFDFRGI
ERQGGRAIVDVSSTSVPIEVEEHGKDILVKFLNTKVPQNLRKRFDVSDFRSPVQIVTFQQKGKNAHMLLAGTGAFGHYVS
QVNKQFMVDVVPLTPEEAQQAKLKKKVFSGRKISLNFQNISIRAVLQLLADFTGINIVVSDKVEGNITLRLNNIPWDQAL
DIILTTQGLAKRQTGNVILIDYKASFDKMEAEELKTQRAIQKLEPVRSELIQINYAKATDLAILIKDKQNSLLSDKGRVS
VDTRTNTLWVQDSGTRINEVRELITQLDVPVKQVLIEARIVEVTKDFAQDLGIRWGVSRPTHLSGTLAGANQLAQGVAPA
NVVPFTDRLNLDLVAAPITGVPPASVGIALAKLGDNILLDLELSALESEGLAELISSPRLITANQQPAVIESGQEIPYQE
ATSSGATAVAFKKAVLSLKVTPQITPDSKVLMELKINQDNALPNLTFNGVPVIATKEIQTNVLVSNGQTIVLGGIYQQDK
SKTINRVPFFGQLPVVGNLFKNTQIALRNDELLIFITPKIITNSLSITTIEGRKPIRFDEK

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=469374 FOLKNPGA_RS05735 WP_182352091.1 1313792..1315897(+) (pilQ) [Legionella sp. PC1000]
GTGCGGAGAATTGTTGCTTTATTTATTTTAATGACTATGAGCTTTGGGATGGCTTTTGCCCAGAATAATCCTTTGATATC
AGTCAAGGTAATTCCTTTACCACTGGGGAAGTTGCGTATTGATTTCGAGTTTGCGCAACCTATAAAGCGAGAGCCTGCAA
GCTTTGTGACCCCAAATCCGGCACGTATAGTCCTTGATTTTATTGACTCTAATCTGGAGTTACCTTCCAAACAGAAAACA
AAAGAAATTAAATTAGGTTCTCTCGATAAATATACTATTGTTGCTGTGGGCCCCCGTGTCCGGGCTATATTGGATTTAAA
TTATCCAGTGCCTTATTTAGGCTCAATTTCTGGAAATGTATATACTCTTATTTTGAATGGCAAAAGAGAGGAGTCAATCC
AACCTCCTAAAGAACTTCTAATCACCAATCGTCCAGTCAGAACAAGTTATGAAATCAATCATTTTGATTTTCGAGGAATT
GAGCGGCAAGGCGGTCGGGCGATAGTAGATGTTTCCAGTACCAGCGTCCCGATTGAAGTAGAAGAGCATGGTAAGGATAT
TTTAGTTAAATTTTTAAATACGAAAGTTCCTCAGAACTTAAGGAAACGTTTTGATGTTTCCGATTTCCGCAGCCCGGTAC
AAATCGTTACTTTTCAACAAAAAGGTAAAAACGCACATATGCTATTGGCGGGTACAGGCGCTTTTGGCCATTATGTTTCT
CAGGTTAATAAGCAATTCATGGTTGATGTAGTTCCTTTGACTCCAGAAGAGGCACAACAGGCTAAATTAAAAAAGAAAGT
TTTTTCTGGAAGAAAAATTTCTTTAAATTTCCAAAACATCAGCATACGTGCTGTATTACAGTTGCTGGCAGATTTTACTG
GAATCAATATTGTAGTGAGTGATAAAGTTGAGGGTAATATTACCCTTAGGTTAAATAATATTCCCTGGGATCAGGCTTTG
GATATTATTTTGACGACACAAGGTTTAGCGAAGCGTCAGACAGGGAATGTGATATTGATCGATTATAAAGCTTCTTTTGA
TAAAATGGAGGCAGAAGAGCTTAAGACCCAACGTGCTATTCAGAAGCTAGAGCCGGTACGTTCAGAGCTGATTCAGATCA
ATTACGCCAAAGCCACCGATCTTGCGATTTTGATTAAAGACAAACAAAATTCCCTTTTATCGGACAAAGGTCGCGTAAGT
GTTGATACGCGAACAAATACCCTCTGGGTTCAAGACAGTGGAACTCGGATAAATGAAGTCAGGGAGTTGATTACACAGTT
GGATGTGCCCGTCAAACAAGTACTTATAGAGGCACGTATCGTCGAAGTGACTAAAGATTTTGCTCAAGATCTTGGTATTC
GATGGGGAGTTTCCAGGCCGACTCATTTAAGTGGTACATTGGCTGGTGCTAATCAGTTGGCGCAAGGAGTTGCTCCGGCA
AATGTCGTACCATTTACAGACAGATTAAACCTGGATTTAGTTGCTGCTCCAATAACGGGCGTGCCTCCGGCTTCTGTAGG
TATTGCATTAGCTAAGCTTGGCGATAATATTTTACTTGATCTCGAACTTTCGGCCTTAGAAAGCGAGGGCCTTGCCGAAT
TGATATCTAGTCCGAGGCTTATTACTGCAAATCAACAGCCTGCGGTAATTGAATCAGGGCAGGAGATTCCCTATCAGGAA
GCTACTTCAAGTGGGGCGACAGCAGTAGCATTCAAAAAAGCGGTATTAAGTTTAAAGGTAACCCCGCAAATTACTCCTGA
TAGTAAGGTACTTATGGAGCTGAAAATTAATCAGGATAATGCATTACCTAACCTAACATTTAATGGAGTACCTGTAATTG
CAACTAAAGAAATTCAGACGAATGTGCTTGTCAGCAATGGACAAACTATAGTACTTGGCGGTATTTATCAGCAAGATAAG
AGCAAAACTATTAACAGAGTACCTTTTTTTGGTCAGTTGCCGGTAGTTGGGAATTTATTTAAAAATACACAAATTGCCCT
TAGAAATGATGAGCTGCTTATATTTATAACACCAAAAATAATCACAAACTCATTATCGATTACAACAATTGAAGGTAGAA
AACCAATTCGTTTTGATGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(525-681)

Bacterial type II/III secretion system short domain (Secretin_N)

(369-433)

Secretin and TonB N terminus short domain (STN)

(295-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain Lp02

72.19

99.001

0.715
  pilQ Legionella pneumophila strain ERS1305867

72.781

96.434

0.702
  comQ Acinetobacter baylyi ADP1

34.877

100

0.365
  pilQ Pseudomonas aeruginosa PAK

36.195

99.715

0.361