Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   FOLKNPGA_RS05715 Genome accession   NZ_CP059400
Coordinates   1311026..1312090 (+) Length   354 a.a.
NCBI ID   WP_182352087.1    Uniprot ID   -
Organism   Legionella sp. PC1000     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1306026..1317090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOLKNPGA_RS05705 (FOLKNPGA_01170) - 1307128..1309497 (-) 2370 WP_182352085.1 penicillin-binding protein 1A -
  FOLKNPGA_RS05710 (FOLKNPGA_01171) - 1309645..1310781 (-) 1137 WP_182352086.1 hypothetical protein -
  FOLKNPGA_RS05715 (FOLKNPGA_01172) pilM 1311026..1312090 (+) 1065 WP_182352087.1 pilus assembly protein PilM Machinery gene
  FOLKNPGA_RS05720 (FOLKNPGA_01173) pilN 1312097..1312672 (+) 576 WP_182352088.1 PilN domain-containing protein Machinery gene
  FOLKNPGA_RS05725 (FOLKNPGA_01174) pilO 1312669..1313268 (+) 600 WP_182352089.1 type 4a pilus biogenesis protein PilO Machinery gene
  FOLKNPGA_RS05730 (FOLKNPGA_01175) pilP 1313265..1313783 (+) 519 WP_182352090.1 pilus assembly protein PilP Machinery gene
  FOLKNPGA_RS05735 (FOLKNPGA_01176) pilQ 1313792..1315897 (+) 2106 WP_182352091.1 type IV pilus secretin PilQ Machinery gene
  FOLKNPGA_RS05740 (FOLKNPGA_01177) aroK 1316428..1316955 (+) 528 WP_010653139.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38873.63 Da        Isoelectric Point: 4.4447

>NTDB_id=469370 FOLKNPGA_RS05715 WP_182352087.1 1311026..1312090(+) (pilM) [Legionella sp. PC1000]
MLKLFQSKHRSILGIDLTSTAVKVLEISGQEGAFVVENYGREVLPANAMDGNTIKDVDAVSQCIKKVIDRLQTTCKQAAL
AVPDSSIISKVIQINEGLNDEEMEELIVTEADKYIPYPIDEINLDFEILGQSEKNSTMLDVLIVASRAENVNQRVETSIH
AGLDAVVIDVESYAVERAAQQLAKDLPASGQDKTIAIIDIGACYTHLFVLQGMKLVYSREEKFGGKQLIDSIAEYYEMSL
EQAALAKENGELPADYEKKVLEPFKENILLQIKRTLQFFYSTSQDGEVDHILLAGGLAKLPGLVSLVQERLGMSTTIANP
FSYMTPGKMVNLDSINNDAPALMVACGLALRNIK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=469370 FOLKNPGA_RS05715 WP_182352087.1 1311026..1312090(+) (pilM) [Legionella sp. PC1000]
ATGCTCAAATTGTTTCAGTCTAAGCATCGTTCAATTCTCGGAATAGATCTTACATCAACAGCGGTTAAAGTCTTGGAAAT
TTCAGGTCAGGAAGGTGCATTTGTTGTTGAAAATTATGGACGGGAAGTATTACCAGCAAATGCAATGGATGGGAACACAA
TTAAAGATGTTGATGCTGTTTCCCAGTGCATTAAAAAAGTAATTGACCGCTTGCAAACAACATGTAAGCAAGCTGCGTTA
GCTGTTCCTGATTCATCAATAATCAGCAAAGTGATACAAATCAATGAAGGTTTAAATGATGAGGAGATGGAAGAACTCAT
TGTTACAGAAGCGGATAAATACATTCCTTATCCCATAGATGAAATTAACCTTGATTTTGAAATTTTGGGGCAGTCTGAAA
AAAATTCAACCATGTTAGATGTACTTATTGTTGCATCACGAGCAGAAAATGTGAATCAACGTGTTGAGACGTCCATTCAC
GCAGGTTTAGATGCTGTAGTGATTGATGTAGAATCTTATGCGGTGGAGAGAGCAGCACAACAACTTGCTAAGGATTTACC
TGCATCGGGACAAGATAAAACCATTGCCATCATTGATATTGGTGCCTGCTATACACATTTATTTGTATTGCAAGGCATGA
AATTGGTTTATTCGAGAGAAGAAAAATTTGGAGGCAAACAATTAATAGACTCGATTGCTGAATATTATGAAATGTCTTTG
GAGCAAGCTGCTCTGGCTAAAGAAAATGGAGAATTACCTGCAGATTATGAAAAAAAGGTTTTGGAGCCTTTTAAAGAAAA
TATTTTGTTGCAAATCAAACGTACATTGCAGTTTTTTTATTCCACAAGCCAGGATGGAGAGGTAGATCATATTTTGCTGG
CTGGAGGGTTAGCCAAGCTGCCTGGATTAGTAAGTTTGGTTCAGGAGCGATTAGGGATGAGTACCACGATTGCCAATCCT
TTTTCGTATATGACTCCAGGAAAAATGGTGAATCTGGACTCTATAAATAATGATGCTCCTGCACTCATGGTAGCGTGTGG
TCTGGCATTAAGGAATATTAAGTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Legionella pneumophila strain ERS1305867

69.774

100

0.698
  pilM Acinetobacter baumannii D1279779

45.042

99.718

0.449
  comM Acinetobacter nosocomialis M2

45.042

99.718

0.449
  comM Acinetobacter baylyi ADP1

43.343

99.718

0.432