Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   M001_RS03780 Genome accession   NZ_CP059396
Coordinates   784277..784597 (-) Length   106 a.a.
NCBI ID   WP_021231962.1    Uniprot ID   -
Organism   Aeromonas veronii Hm21     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 779277..789597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M001_RS03760 (M001_003760) - 779673..780371 (-) 699 WP_021231965.1 DnaT-like ssDNA-binding domain-containing protein -
  M001_RS03765 (M001_003765) - 780612..781583 (+) 972 WP_021231964.1 response regulator -
  M001_RS03770 (M001_003770) - 781658..783055 (-) 1398 WP_021231963.1 peptide MFS transporter -
  M001_RS03775 (M001_003775) galU 783269..784180 (-) 912 WP_005339121.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  M001_RS03780 (M001_003780) comE1/comEA 784277..784597 (-) 321 WP_021231962.1 ComEA family DNA-binding protein Machinery gene
  M001_RS03785 (M001_003785) pta 784975..787155 (-) 2181 WP_005339119.1 phosphate acetyltransferase -
  M001_RS03790 (M001_003790) - 787210..788412 (-) 1203 WP_005349210.1 acetate kinase -
  M001_RS03795 (M001_003795) yfbV 788717..789157 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11270.27 Da        Isoelectric Point: 9.6564

>NTDB_id=469330 M001_RS03780 WP_021231962.1 784277..784597(-) (comE1/comEA) [Aeromonas veronii Hm21]
MLMKKLSAIMLLACLPLFSQPVLAADKAAPKQTTTAEVAKEAGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=469330 M001_RS03780 WP_021231962.1 784277..784597(-) (comE1/comEA) [Aeromonas veronii Hm21]
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCAGCACCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAAGCCGGCAAGCTGAACATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCAGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

49.107

100

0.519
  comEA/comE1 Glaesserella parasuis strain SC1401

46.903

100

0.5
  comEA Vibrio cholerae strain A1552

49.057

100

0.491
  comEA Vibrio cholerae C6706

49.057

100

0.491
  comEA Vibrio parahaemolyticus RIMD 2210633

45.361

91.509

0.415
  comEA Legionella pneumophila str. Paris

40.404

93.396

0.377
  comEA Legionella pneumophila strain ERS1305867

40.404

93.396

0.377