Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   HZT45_RS11665 Genome accession   NZ_CP059318
Coordinates   2450669..2451106 (-) Length   145 a.a.
NCBI ID   WP_052827646.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIOMA BV10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2445669..2456106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT45_RS11615 (HZT45_11615) sinI 2446052..2446225 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  HZT45_RS11620 (HZT45_11620) sinR 2446259..2446594 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  HZT45_RS11625 (HZT45_11625) tasA 2446642..2447427 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  HZT45_RS11630 (HZT45_11630) sipW 2447492..2448076 (-) 585 WP_012117977.1 signal peptidase I SipW -
  HZT45_RS11635 (HZT45_11635) tapA 2448048..2448719 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  HZT45_RS11640 (HZT45_11640) - 2448978..2449307 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  HZT45_RS11645 (HZT45_11645) - 2449348..2449527 (-) 180 WP_003153093.1 YqzE family protein -
  HZT45_RS11650 (HZT45_11650) comGG 2449584..2449961 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  HZT45_RS11655 (HZT45_11655) comGF 2449962..2450462 (-) 501 WP_257726452.1 competence type IV pilus minor pilin ComGF -
  HZT45_RS11660 (HZT45_11660) comGE 2450371..2450685 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  HZT45_RS11665 (HZT45_11665) comGD 2450669..2451106 (-) 438 WP_052827646.1 competence type IV pilus minor pilin ComGD Machinery gene
  HZT45_RS11670 (HZT45_11670) comGC 2451096..2451362 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  HZT45_RS11675 (HZT45_11675) comGB 2451409..2452446 (-) 1038 WP_012117984.1 competence type IV pilus assembly protein ComGB Machinery gene
  HZT45_RS11680 (HZT45_11680) comGA 2452433..2453503 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  HZT45_RS11685 (HZT45_11685) - 2453700..2454650 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  HZT45_RS11690 (HZT45_11690) - 2454796..2456097 (+) 1302 WP_021494315.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16263.70 Da        Isoelectric Point: 10.2475

>NTDB_id=468528 HZT45_RS11665 WP_052827646.1 2450669..2451106(-) (comGD) [Bacillus velezensis strain BIOMA BV10]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPAYTHLAVRQKTEQLQKDIQLAQETAIAENKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=468528 HZT45_RS11665 WP_052827646.1 2450669..2451106(-) (comGD) [Bacillus velezensis strain BIOMA BV10]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGCCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAAAATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGACTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACGGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.849

100

0.572