Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H0N28_RS07940 Genome accession   NZ_CP059041
Coordinates   1693111..1693491 (+) Length   126 a.a.
NCBI ID   WP_000836915.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 17978     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1688111..1698491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N28_RS07910 (H0N28_07905) kdsB 1689014..1689775 (+) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H0N28_RS07915 (H0N28_07910) - 1689787..1690767 (+) 981 WP_001075412.1 DNA polymerase III subunit delta' -
  H0N28_RS07920 (H0N28_07915) - 1690779..1691120 (+) 342 WP_001183025.1 PilZ domain-containing protein -
  H0N28_RS07925 (H0N28_07920) - 1691138..1691911 (+) 774 WP_000497298.1 TatD family hydrolase -
  H0N28_RS07930 (H0N28_07925) - 1691949..1692557 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  H0N28_RS07935 (H0N28_07930) - 1692567..1693121 (+) 555 WP_000841375.1 type II secretion system protein -
  H0N28_RS07940 (H0N28_07935) xcpV 1693111..1693491 (+) 381 WP_000836915.1 type II secretion system minor pseudopilin GspI Machinery gene
  H0N28_RS07945 (H0N28_07940) xcpW 1693491..1694192 (+) 702 WP_000594584.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H0N28_RS07950 (H0N28_07945) gspK 1694192..1695151 (+) 960 WP_000301478.1 type II secretion system minor pseudopilin GspK -
  H0N28_RS07955 (H0N28_07950) - 1695381..1695977 (+) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  H0N28_RS07960 (H0N28_07955) ung 1696028..1696741 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  H0N28_RS07965 (H0N28_07960) - 1696738..1697862 (+) 1125 WP_000982062.1 enoyl-CoA hydratase/isomerase family protein -
  H0N28_RS07970 (H0N28_07965) tadA 1697869..1698372 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13957.17 Da        Isoelectric Point: 9.8004

>NTDB_id=466643 H0N28_RS07940 WP_000836915.1 1693111..1693491(+) (xcpV) [Acinetobacter baumannii strain ATCC 17978]
MKSKGFTLLEVMVALAIFAVAAVALTKVATQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGEIWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=466643 H0N28_RS07940 WP_000836915.1 1693111..1693491(+) (xcpV) [Acinetobacter baumannii strain ATCC 17978]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAACGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAATTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

98.413

100

0.984