Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   HXV88_RS03820 Genome accession   NZ_CP058912
Coordinates   786483..786803 (-) Length   106 a.a.
NCBI ID   WP_179903187.1    Uniprot ID   -
Organism   Aeromonas veronii strain JC529     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 781483..791803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXV88_RS03800 (HXV88_03800) - 781883..782581 (-) 699 WP_179903185.1 DnaT-like ssDNA-binding domain-containing protein -
  HXV88_RS03805 (HXV88_03805) - 782820..783791 (+) 972 WP_179903186.1 response regulator -
  HXV88_RS03810 (HXV88_03810) - 783864..785261 (-) 1398 WP_021231963.1 peptide MFS transporter -
  HXV88_RS03815 (HXV88_03815) galU 785475..786386 (-) 912 WP_005339121.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HXV88_RS03820 (HXV88_03820) comE1/comEA 786483..786803 (-) 321 WP_179903187.1 ComEA family DNA-binding protein Machinery gene
  HXV88_RS03825 (HXV88_03825) pta 787181..789361 (-) 2181 WP_005339119.1 phosphate acetyltransferase -
  HXV88_RS03830 (HXV88_03830) - 789416..790618 (-) 1203 WP_005349210.1 acetate kinase -
  HXV88_RS03835 (HXV88_03835) yfbV 790923..791363 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11304.30 Da        Isoelectric Point: 9.6564

>NTDB_id=465954 HXV88_RS03820 WP_179903187.1 786483..786803(-) (comE1/comEA) [Aeromonas veronii strain JC529]
MLMKKLSAMMLLACLPLFSQPVLAADKAAPKQTTTAEVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=465954 HXV88_RS03820 WP_179903187.1 786483..786803(-) (comE1/comEA) [Aeromonas veronii strain JC529]
ATGCTGATGAAGAAGCTCTCTGCAATGATGCTGTTAGCCTGCTTGCCCCTGTTCAGCCAACCCGTGCTGGCCGCAGATAA
GGCAGCACCCAAGCAAACAACCACAGCCGAGGTCGCCAAGGAGTCCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCAGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

50

100

0.528
  comEA Vibrio cholerae C6706

49.057

100

0.491
  comEA Vibrio cholerae strain A1552

49.057

100

0.491
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio parahaemolyticus RIMD 2210633

44.898

92.453

0.415
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368