Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SSU16085_RS06470 Genome accession   NZ_CP058740
Coordinates   1350940..1351782 (+) Length   280 a.a.
NCBI ID   WP_002936492.1    Uniprot ID   -
Organism   Streptococcus suis strain 16085/3b     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1345940..1356782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS06435 (SSU16085_01313) ylqF 1346022..1346873 (+) 852 WP_024394486.1 ribosome biogenesis GTPase YlqF -
  SSU16085_RS06440 (SSU16085_01314) - 1346860..1347633 (+) 774 WP_024387771.1 ribonuclease HII -
  SSU16085_RS06445 (SSU16085_01315) - 1347636..1348646 (+) 1011 WP_029174502.1 YdcF family protein -
  SSU16085_RS06450 (SSU16085_01316) - 1348679..1349329 (-) 651 WP_002936498.1 hemolysin III family protein -
  SSU16085_RS06455 (SSU16085_01317) - 1349319..1349870 (-) 552 WP_024394485.1 DUF1836 domain-containing protein -
  SSU16085_RS06460 (SSU16085_01318) - 1349967..1350278 (-) 312 WP_014637902.1 rhodanese-like domain-containing protein -
  SSU16085_RS06465 (SSU16085_01319) - 1350420..1350881 (+) 462 Protein_1256 sugar O-acetyltransferase -
  SSU16085_RS06470 (SSU16085_01320) dprA 1350940..1351782 (+) 843 WP_002936492.1 DNA-processing protein DprA Machinery gene
  SSU16085_RS06475 (SSU16085_01321) topA 1351875..1353968 (+) 2094 WP_024394484.1 type I DNA topoisomerase -
  SSU16085_RS06480 (SSU16085_01322) rplJ 1354545..1355039 (+) 495 WP_002936486.1 50S ribosomal protein L10 -
  SSU16085_RS06485 (SSU16085_01323) rplL 1355105..1355470 (+) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  SSU16085_RS10780 - 1355595..1356346 (+) 752 Protein_1261 HAD family hydrolase -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31261.11 Da        Isoelectric Point: 8.4451

>NTDB_id=465156 SSU16085_RS06470 WP_002936492.1 1350940..1351782(+) (dprA) [Streptococcus suis strain 16085/3b]
MNNFELFKWKKAGLTNLNVNKVLAYQEKHGKKLTLRNVAIVSECKNPVLFMENYKNLDTKACREEFNKYPSFSILDDIYP
LALKQIYNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGIQSVQKIIKELNNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENKDLQTYIGKHHLVLTEYEAGAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCVTSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=465156 SSU16085_RS06470 WP_002936492.1 1350940..1351782(+) (dprA) [Streptococcus suis strain 16085/3b]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCGGGTTTGACCAATCTTAATGTGAATAAAGTTTTGGCCTATCAAGA
AAAACACGGAAAAAAATTGACCTTGCGAAATGTCGCTATAGTGTCTGAATGTAAAAATCCAGTGCTATTTATGGAAAATT
ATAAGAATCTAGATACAAAAGCCTGTCGCGAGGAATTTAATAAGTATCCATCATTTTCAATTTTAGATGACATCTATCCT
TTGGCGCTCAAACAGATTTACAATCCGCCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTAGAAAAATCAAAGCT
TGCAGTCGTTGGTACACGAAATGCCAGCAAAAATGGTATTCAGTCTGTTCAGAAGATTATCAAAGAACTCAACAATCGCT
TTGTCATTGTCAGTGGTTTGGCAAGAGGAATTGATACAGCTGCTCATATTGCTAGCCTGAAAAATGGTGGACAAACCATT
GCTGTAATTGGAACAGGTTTAGATAATATTTATCCAAAAGAAAATAAAGATTTGCAGACCTATATCGGAAAACACCATTT
GGTGCTGACAGAGTATGAAGCTGGTGCTCAGCCACTCAAATACCATTTTCCAGAACGAAATCGCATCATTGCTGGGTTGG
TAGAAGGATTGGTAGTCTGTGAGGCTAAAATGCGGTCTGGTAGCTTGATTACCTGCGAACGTGCCTTGGAAGAAGGAAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGAGCAAAGTG
CGTTACATCAGGCTTGGACATCATTTCTGAGTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

69.286

100

0.693
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.571

100

0.636
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis SK321

63.571

100

0.636
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.571

100

0.636
  dprA Lactococcus lactis subsp. cremoris KW2

60.357

100

0.604
  dprA Legionella pneumophila strain ERS1305867

41.7

88.214

0.368
  dprA Bacillus subtilis subsp. subtilis str. 168

50.746

71.786

0.364