Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   JQ467_RS02010 Genome accession   NZ_CP069326
Coordinates   430706..431071 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain R11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 425706..436071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQ467_RS01980 (JQ467_01980) pyrR 426328..426840 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  JQ467_RS01985 (JQ467_01985) ruvX 426952..427386 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  JQ467_RS01990 (JQ467_01990) - 427386..427955 (-) 570 WP_010793542.1 YqgE/AlgH family protein -
  JQ467_RS01995 (JQ467_01995) - 428004..428897 (-) 894 WP_003162015.1 energy transducer TonB -
  JQ467_RS02000 (JQ467_02000) gshB 429044..429997 (-) 954 WP_003100943.1 glutathione synthase -
  JQ467_RS02005 (JQ467_02005) pilG 430252..430659 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  JQ467_RS02010 (JQ467_02010) pilH 430706..431071 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  JQ467_RS02015 (JQ467_02015) - 431122..431658 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  JQ467_RS02020 (JQ467_02020) pilJ 431743..433791 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  JQ467_RS02025 (JQ467_02025) pilK 433852..434727 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=465080 JQ467_RS02010 WP_003084587.1 430706..431071(+) (pilH) [Pseudomonas aeruginosa strain R11]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=465080 JQ467_RS02010 WP_003084587.1 430706..431071(+) (pilH) [Pseudomonas aeruginosa strain R11]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364