Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HVY19_RS07955 Genome accession   NZ_CP057483
Coordinates   1723957..1724523 (+) Length   188 a.a.
NCBI ID   WP_181683789.1    Uniprot ID   -
Organism   Citrobacter sp. RHB25-C09     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1718957..1729523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVY19_RS07935 (HVY19_07940) - 1719341..1721101 (-) 1761 WP_181683785.1 Lon protease family protein -
  HVY19_RS07940 (HVY19_07945) matP 1721287..1721739 (+) 453 WP_181683786.1 macrodomain Ter protein MatP -
  HVY19_RS07945 (HVY19_07950) ompA 1721822..1722874 (-) 1053 WP_181683787.1 porin OmpA -
  HVY19_RS07950 (HVY19_07955) sulA 1723230..1723739 (-) 510 WP_181683788.1 SOS-induced cell division inhibitor SulA -
  HVY19_RS07955 (HVY19_07960) sxy/tfoX 1723957..1724523 (+) 567 WP_181683789.1 TfoX/Sxy family DNA transformation protein Regulator
  HVY19_RS07960 (HVY19_07965) yccS 1724540..1726702 (-) 2163 WP_181683790.1 YccS family putative transporter -
  HVY19_RS07965 (HVY19_07970) - 1726721..1727167 (-) 447 WP_181683791.1 YccF domain-containing protein -
  HVY19_RS07970 (HVY19_07975) helD 1727290..1729344 (+) 2055 WP_181683792.1 DNA helicase IV -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 21929.55 Da        Isoelectric Point: 9.5817

>NTDB_id=461806 HVY19_RS07955 WP_181683789.1 1723957..1724523(+) (sxy/tfoX) [Citrobacter sp. RHB25-C09]
MKVHSYERIYKSQEYLSSLGTIRYRSLFGSYSLTIEETVFAMVDKGELYLRACEQSVLYCVKHRPVWLTLMKRGRPVMLN
YYQVDEKLWCDQPQLIELSQYSLDAAKMEKHSRGSRHRLKDLPNMTFHLESLLNEAGINDVRTLKILGAKMCWLRLRQAN
KSITEKVLYILEGAINGTHEAALPALRR

Nucleotide


Download         Length: 567 bp        

>NTDB_id=461806 HVY19_RS07955 WP_181683789.1 1723957..1724523(+) (sxy/tfoX) [Citrobacter sp. RHB25-C09]
ATGAAAGTACACTCCTATGAAAGGATCTATAAATCACAGGAATATTTATCTTCACTGGGGACGATCCGCTACCGGTCGCT
CTTCGGTAGCTACAGTCTGACAATCGAAGAGACGGTATTTGCCATGGTCGATAAAGGGGAGCTTTACCTTCGTGCTTGTG
AGCAAAGTGTACTGTACTGTGTGAAGCATAGACCTGTCTGGTTGACATTGATGAAGCGTGGACGTCCGGTCATGCTTAAC
TATTATCAGGTCGACGAAAAGCTGTGGTGCGATCAGCCGCAGTTGATCGAGCTATCCCAATATTCACTCGATGCGGCAAA
GATGGAAAAGCATAGTCGTGGCTCGCGGCACCGACTAAAAGACCTCCCCAACATGACATTTCATCTGGAGAGCTTGCTAA
ATGAAGCCGGAATTAACGATGTTCGTACTTTGAAAATACTGGGCGCGAAAATGTGTTGGTTACGGCTTCGACAGGCAAAT
AAATCGATTACCGAAAAAGTTCTCTACATCCTCGAAGGCGCGATTAATGGTACCCATGAGGCGGCGCTCCCGGCGTTGCG
CCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

71.277

100

0.713