Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JHS79_RS17370 Genome accession   NZ_CP068641
Coordinates   3497883..3499406 (-) Length   507 a.a.
NCBI ID   WP_203516299.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP157     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3492883..3504406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS17350 (JHS79_17210) - 3494164..3495150 (+) 987 WP_020904430.1 serine/threonine protein kinase -
  JHS79_RS17355 (JHS79_17215) - 3495185..3495787 (+) 603 WP_005454748.1 thiol:disulfide interchange protein DsbA/DsbL -
  JHS79_RS17360 (JHS79_17220) - 3495829..3496707 (-) 879 WP_020904428.1 acyltransferase -
  JHS79_RS17365 (JHS79_17225) - 3496870..3497826 (+) 957 WP_203516298.1 DUF2860 domain-containing protein -
  JHS79_RS17370 (JHS79_17230) comM 3497883..3499406 (-) 1524 WP_203516299.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JHS79_RS17375 (JHS79_17235) ilvG 3499871..3501517 (+) 1647 WP_203516300.1 acetolactate synthase 2 catalytic subunit -
  JHS79_RS17380 (JHS79_17240) ilvM 3501528..3501812 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  JHS79_RS17385 (JHS79_17245) ilvE 3501825..3502763 (+) 939 WP_015297538.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55032.10 Da        Isoelectric Point: 8.4875

>NTDB_id=460392 JHS79_RS17370 WP_203516299.1 3497883..3499406(-) (comM) [Vibrio parahaemolyticus strain VP157]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDRLKNYEFVGELALSGGLRPVKGVLPAALAASKVGRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLYQTPKRKTVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWRSRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPSLPKGTLAEGGDR
GEPTELVKERVSLARESMLNRNGKVNALLGSREIEAFCPLQKSDAEFLEIALHRLGLSIRAYHRIIKVARTIADLEGAEQ
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=460392 JHS79_RS17370 WP_203516299.1 3497883..3499406(-) (comM) [Vibrio parahaemolyticus strain VP157]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGTGTCGGGGTGCAAGCGCCGTCAGTTAGTGTGGAAGTGCATATCAGTAA
TGGCATGCCCGGCTTTACTCTCGTTGGGTTGCCGGAGACTACGGTAAAGGAATCCAAAGATCGTGTACGCAGTGCGATCA
TCAACTCAAATTTCCAGTTTCCAGCCAAGCGCATTACGGTCAATTTGGCCCCGGCGGATTTACCTAAAGAAGGCGGACGT
TTTGATTTGCCTATCGCATTGGGTATTTTGGCGGCTTCAGAGCAAATCGCGACAGATAGGCTCAAAAACTACGAATTTGT
TGGCGAATTAGCCCTGTCTGGAGGATTAAGACCTGTCAAAGGCGTGCTTCCTGCCGCGTTGGCTGCAAGCAAAGTAGGAC
GTCATTTGGTGGTGCCTCATGTCAATGGCGATCAAGCAGCGTTGGTGGGCAAAGAGCAACATAAGTCAGCGCAATCCTTA
CTTGAGGTGTGTGCGGAGTTATGTGGTCAGCATCGTCTCAATCTTTATCAAACTCCGAAGCGAAAAACGGTTGAAAAACA
TGGTCGAGATCTACAAGACATCATTGGCCAGCAACAAGGCAAGCGTGCTCTAGAAATTGCGGCGGCTGGAAACCACAACC
TACTTTTCCTTGGTCCTCCTGGTACAGGAAAAACCATGCTGGCATCGCGTTTATGCGACTTACTGCCGGAGATGAGCGAC
GAAGAAGCGATGGAAACGGCTTCAGTCGCATCACTGACGCAAAGTGAGATTAATGAGCACAACTGGAGGTCGCGTCCGTT
TCGTGCGCCGCACCATTCCAGTTCGATGGCTGCATTAGTTGGTGGTGGCTCGGTGCCAAGACCGGGAGAGATTTCTTTGG
CTCACAATGGGTTATTGTTCCTTGATGAAATGCCGGAGTTTGACCGTAAAGTGTTGGACTCGTTACGAGAGCCACTGGAA
TCGGGTGAGATCATCATTTCGCGCGCACAAGGAAAAACGCGTTTTCCTGCTCGTTTTCAGCTGGTGGGCGCGTTGAATCC
AAGCCCAACTGGCTATTACGAAGGGAATCAAGCTCGCACTAACCCTCAAGCTATTTTGCGTTACTTAGGTCGTTTATCGG
GACCGCTTCTCGACCGTTTTGATATGTCGTTAGAAATTCCATCCTTACCGAAAGGCACGTTGGCGGAAGGTGGTGACCGA
GGTGAACCCACGGAACTCGTTAAAGAGCGCGTCAGTCTTGCTCGCGAGAGCATGCTCAATCGAAACGGCAAAGTAAACGC
ACTACTCGGCAGCCGTGAAATTGAGGCATTTTGCCCGTTGCAAAAAAGCGATGCGGAATTTCTCGAAATTGCACTACATC
GGCTGGGGTTATCGATTCGTGCCTATCATCGCATCATTAAAGTGGCCCGCACGATAGCGGATTTAGAAGGTGCTGAGCAA
ATTGAACGTTCTCATTTAGCGGAAGCGCTCGGGTATCGCGCGATGGACCGATTGCTGAAACAACTTACGGCTCAAGCCGT
GTAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.083

100

0.941
  comM Vibrio cholerae O1 biovar El Tor strain E7946

84.615

100

0.846
  comM Vibrio cholerae strain A1552

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

50

97.83

0.489
  comM Legionella pneumophila strain ERS1305867

50

97.83

0.489
  comM Acinetobacter baylyi ADP1

49.499

98.422

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442