Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HV559_RS03750 Genome accession   NZ_CP055306
Coordinates   770289..770615 (-) Length   108 a.a.
NCBI ID   WP_159629038.1    Uniprot ID   -
Organism   Mannheimia pernigra strain BNO311     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 765289..775615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV559_RS03735 (HV559_03735) gshAB 765885..768161 (-) 2277 WP_176809587.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  HV559_RS03740 (HV559_03740) - 768368..769171 (+) 804 WP_176807595.1 tyrosine-type recombinase/integrase -
  HV559_RS03745 (HV559_03745) asd 769231..770127 (-) 897 WP_176809588.1 archaetidylserine decarboxylase -
  HV559_RS03750 (HV559_03750) comEA/comE1 770289..770615 (-) 327 WP_159629038.1 ComEA family DNA-binding protein Machinery gene
  HV559_RS03755 (HV559_03755) - 770895..772067 (+) 1173 WP_176809589.1 LysM-like peptidoglycan-binding domain-containing protein -
  HV559_RS03760 (HV559_03760) - 772129..772548 (+) 420 WP_176807593.1 MliC family protein -
  HV559_RS03765 (HV559_03765) waaF 772617..773654 (+) 1038 WP_176809590.1 lipopolysaccharide heptosyltransferase II -
  HV559_RS03770 (HV559_03770) rfaC 773717..774676 (+) 960 WP_176809591.1 lipopolysaccharide heptosyltransferase RfaC -
  HV559_RS03775 (HV559_03775) rpsL 774796..775170 (+) 375 WP_005708967.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11757.50 Da        Isoelectric Point: 10.0540

>NTDB_id=457520 HV559_RS03750 WP_159629038.1 770289..770615(-) (comEA/comE1) [Mannheimia pernigra strain BNO311]
MNKMKTLALSLLIGLNTLAFAQKTPQIEQNNTLKAQQSMQKNLSAVNINTASAAELQDKLVGIGEKKAQAIVDYRTQNGN
FKSIEQLTEVSGIGQATLEKNRGNIILE

Nucleotide


Download         Length: 327 bp        

>NTDB_id=457520 HV559_RS03750 WP_159629038.1 770289..770615(-) (comEA/comE1) [Mannheimia pernigra strain BNO311]
ATGAACAAGATGAAAACTCTCGCACTCAGTCTATTAATCGGCTTAAACACCCTAGCTTTTGCTCAAAAAACACCACAAAT
TGAGCAAAATAATACGCTAAAAGCACAACAAAGTATGCAAAAAAACCTTAGTGCGGTAAATATCAATACAGCGAGTGCAG
CCGAACTGCAAGATAAGCTCGTAGGTATAGGTGAGAAAAAAGCCCAAGCCATTGTGGATTATCGTACCCAAAACGGCAAT
TTCAAAAGTATTGAACAACTTACTGAAGTTTCTGGAATCGGGCAAGCTACCTTAGAGAAAAACCGAGGAAATATCATTTT
AGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

53.097

100

0.556
  comEA Vibrio cholerae C6706

49.057

98.148

0.481
  comEA Vibrio cholerae strain A1552

49.057

98.148

0.481
  comE1/comEA Haemophilus influenzae Rd KW20

64.516

57.407

0.37
  comEA Vibrio parahaemolyticus RIMD 2210633

62.903

57.407

0.361
  comEA Legionella pneumophila strain ERS1305867

36.792

98.148

0.361
  comEA Legionella pneumophila str. Paris

36.792

98.148

0.361