Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HV560_RS03740 Genome accession   NZ_CP055305
Coordinates   760372..760698 (-) Length   108 a.a.
NCBI ID   WP_176812176.1    Uniprot ID   -
Organism   Mannheimia pernigra strain 17CN0883     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 755372..765698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV560_RS03725 (HV560_03725) gshAB 755968..758244 (-) 2277 WP_176812175.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  HV560_RS03730 (HV560_03730) - 758451..759254 (+) 804 WP_176807595.1 tyrosine-type recombinase/integrase -
  HV560_RS03735 (HV560_03735) asd 759314..760210 (-) 897 WP_176809588.1 archaetidylserine decarboxylase -
  HV560_RS03740 (HV560_03740) comEA/comE1 760372..760698 (-) 327 WP_176812176.1 ComEA family DNA-binding protein Machinery gene
  HV560_RS03745 (HV560_03745) - 760978..762150 (+) 1173 WP_176809589.1 LysM-like peptidoglycan-binding domain-containing protein -
  HV560_RS03750 (HV560_03750) - 762212..762631 (+) 420 WP_176807593.1 MliC family protein -
  HV560_RS03755 (HV560_03755) waaF 762700..763737 (+) 1038 WP_176812177.1 lipopolysaccharide heptosyltransferase II -
  HV560_RS03760 (HV560_03760) rfaC 763800..764759 (+) 960 WP_176807591.1 lipopolysaccharide heptosyltransferase RfaC -
  HV560_RS03765 (HV560_03765) rpsL 764879..765253 (+) 375 WP_005708967.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11743.47 Da        Isoelectric Point: 10.0540

>NTDB_id=457497 HV560_RS03740 WP_176812176.1 760372..760698(-) (comEA/comE1) [Mannheimia pernigra strain 17CN0883]
MNKMKTLALSLLIGLNTLAFAQKTPQIEQNNTLKAQQSMQKNLSAVNINTASAAELQDKLVGIGEKKAQAIVDYRTQNGN
FKSIEQLTEVSGIGQATLEKNRGNIVLE

Nucleotide


Download         Length: 327 bp        

>NTDB_id=457497 HV560_RS03740 WP_176812176.1 760372..760698(-) (comEA/comE1) [Mannheimia pernigra strain 17CN0883]
ATGAACAAGATGAAAACTCTCGCACTCAGTCTATTAATCGGCTTAAACACCCTGGCTTTCGCTCAAAAAACACCACAAAT
TGAGCAAAATAATACGCTAAAAGCACAACAAAGTATGCAAAAAAACCTTAGTGCGGTAAATATCAATACAGCGAGTGCAG
CCGAACTGCAAGATAAGCTCGTAGGTATAGGTGAGAAAAAAGCCCAAGCCATTGTGGATTATCGTACCCAAAACGGTAAT
TTCAAAAGTATTGAACAACTTACTGAAGTTTCTGGAATCGGGCAAGCTACCTTAGAGAAAAACCGAGGAAATATCGTTTT
AGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

53.982

100

0.565
  comEA Vibrio cholerae C6706

49.057

98.148

0.481
  comEA Vibrio cholerae strain A1552

49.057

98.148

0.481
  comE1/comEA Haemophilus influenzae Rd KW20

62.903

57.407

0.361
  comEA Vibrio parahaemolyticus RIMD 2210633

62.903

57.407

0.361
  comEA Legionella pneumophila strain ERS1305867

36.792

98.148

0.361
  comEA Legionella pneumophila str. Paris

36.792

98.148

0.361