Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JFL55_RS08555 Genome accession   NZ_CP066564
Coordinates   1838170..1839699 (+) Length   509 a.a.
NCBI ID   WP_132995317.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-69     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1833170..1844699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL55_RS08535 (JFL55_08535) murQ 1833953..1834864 (-) 912 WP_132995311.1 N-acetylmuramic acid 6-phosphate etherase -
  JFL55_RS08540 (JFL55_08540) - 1834867..1835988 (-) 1122 WP_198974145.1 anhydro-N-acetylmuramic acid kinase -
  JFL55_RS08545 (JFL55_08545) glmU 1836091..1837452 (+) 1362 WP_041604967.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  JFL55_RS08550 (JFL55_08550) yihA 1837454..1838068 (+) 615 WP_143432535.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  JFL55_RS08555 (JFL55_08555) comM 1838170..1839699 (+) 1530 WP_132995317.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JFL55_RS08565 (JFL55_08565) - 1840101..1840763 (+) 663 WP_075320943.1 Bax inhibitor-1/YccA family protein -
  JFL55_RS08570 (JFL55_08570) - 1840841..1841170 (+) 330 WP_011608483.1 TusE/DsrC/DsvC family sulfur relay protein -
  JFL55_RS08575 (JFL55_08575) - 1841276..1842157 (+) 882 WP_012341045.1 metal ABC transporter substrate-binding protein -
  JFL55_RS08580 (JFL55_08580) - 1842167..1842925 (+) 759 WP_011608481.1 metal ABC transporter ATP-binding protein -
  JFL55_RS08585 (JFL55_08585) - 1842930..1843820 (+) 891 WP_011608480.1 metal ABC transporter permease -
  JFL55_RS08590 (JFL55_08590) - 1843813..1844655 (+) 843 WP_011608479.1 metal ABC transporter permease -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55777.98 Da        Isoelectric Point: 9.4288

>NTDB_id=455535 JFL55_RS08555 WP_132995317.1 1838170..1839699(+) (comM) [Histophilus somni strain ASc-MMNZ-VFA-69]
MSLAVVYSRASMGVQAPLVTIEVHLSNGKPAFTLVGLPEKTVTEAQGRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQINAKKLQQFEFVAELALTGELRGVHGVIPAILAGQKSKRQLIVAQQNANEASLVSQHETFFARNL
LEVVQFLNDDSSLPSSTTLCMQSAVDFSPQSNKDLTDIIGQQHAKRALMIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
DMTDQEAIETASVTSLVQNELNFQNWKQRPFRAPHHSASSPALVGGGTIPKPGEISLAHNGVLFLDELPEFERRVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGIHNRTSPQQVLRYLNRLSGPFLDRFDLSIEVPLLPQGALQN
TEDRGETTAQVKEKVLRVREIQLARAGKVNAYLTGKEIERDCKLTEQDALFLENTLTKLGLSVRAYHRILKVARTIADLN
GDSDIKQNHLAEALSYRAMDRLLRKLSDQ

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=455535 JFL55_RS08555 WP_132995317.1 1838170..1839699(+) (comM) [Histophilus somni strain ASc-MMNZ-VFA-69]
ATGTCATTAGCAGTTGTTTATAGTCGAGCATCAATGGGCGTACAAGCACCTTTGGTGACAATTGAAGTTCACTTGAGTAA
TGGAAAACCTGCTTTTACCCTCGTTGGATTGCCAGAGAAAACAGTAACTGAGGCTCAAGGACGAGTACGTAGTGCATTAC
TCAATGCTCAATTTAAATACCCGGCAAAACGCATTACAGTTAATCTTGCTCCGGCAGATTTGCCAAAAGAGGGAGGGCGT
TTTGATTTACCTATTGCACTCGGCATCTTAGCGGCCTCGGAACAGATTAATGCAAAAAAGTTACAACAATTTGAATTTGT
TGCAGAGTTGGCTCTCACAGGTGAGTTAAGAGGCGTACACGGTGTAATCCCTGCTATTTTAGCGGGGCAAAAATCTAAGC
GTCAACTTATTGTCGCACAACAAAATGCTAATGAAGCCTCTTTAGTTTCACAACACGAAACATTTTTTGCACGGAACTTA
TTGGAGGTCGTACAATTCCTGAATGACGACAGTTCGCTACCTTCATCCACAACGTTATGTATGCAAAGTGCGGTAGATTT
TTCACCTCAATCTAATAAAGATCTGACGGATATTATTGGTCAACAACATGCTAAACGAGCCTTAATGATTGCAGCTGCCG
GACAACATAATTTGTTGTTTCTCGGACCGCCCGGCACAGGTAAAACCATGTTAGCAAGCCGTCTAACTGGCTTGCTACCG
GATATGACAGATCAAGAGGCAATAGAAACCGCCTCTGTAACAAGTTTGGTACAAAACGAATTAAATTTTCAAAATTGGAA
ACAACGTCCTTTTCGTGCACCTCATCATAGTGCCTCATCACCGGCATTGGTTGGAGGAGGAACAATTCCGAAACCGGGAG
AAATTTCTTTGGCTCATAACGGTGTATTATTTTTAGACGAATTACCCGAATTTGAACGGAGAGTGCTGGATGCTTTACGC
CAGCCTTTAGAAAGCGGAGAAATAATTATTTCACGTGCGAATGCAAAAATTCAGTTTCCGGCACGTTTTCAATTAGTGGC
AGCGATGAATCCAAGTCCAACGGGACATTATACTGGTATACACAACCGCACTTCACCACAACAAGTGTTGCGTTATTTGA
ACAGACTTTCCGGTCCTTTTTTAGATCGCTTTGATCTTTCCATTGAAGTGCCTTTACTTCCACAAGGTGCTTTGCAAAAT
ACCGAAGATCGAGGTGAAACAACAGCACAAGTTAAAGAAAAAGTATTAAGGGTCAGAGAAATTCAGCTAGCTAGAGCCGG
AAAAGTCAATGCTTATTTAACCGGTAAAGAAATTGAGCGAGATTGCAAGTTGACTGAGCAAGATGCACTATTTTTAGAAA
ATACTTTAACCAAACTCGGTTTATCTGTTCGTGCTTATCATCGAATTTTAAAAGTTGCACGCACTATCGCCGATTTAAAC
GGAGATTCTGATATCAAACAAAACCACTTAGCTGAAGCATTAAGCTATCGAGCCATGGATCGTTTGCTACGGAAACTATC
AGACCAATAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

84.449

99.804

0.843
  comM Glaesserella parasuis strain SC1401

76.331

99.607

0.76
  comM Vibrio cholerae O1 biovar El Tor strain E7946

65.226

100

0.652
  comM Vibrio cholerae strain A1552

65.226

100

0.652
  comM Vibrio campbellii strain DS40M4

64.023

100

0.65
  comM Legionella pneumophila str. Paris

51.287

99.214

0.509
  comM Legionella pneumophila strain ERS1305867

51.287

99.214

0.509
  comM Acinetobacter baylyi ADP1

48.4

98.232

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.825

100

0.464