Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HUI97_RS16700 Genome accession   NZ_CP054855
Coordinates   3679089..3679409 (+) Length   106 a.a.
NCBI ID   WP_206900469.1    Uniprot ID   -
Organism   Aeromonas veronii strain 1708-29120     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3674089..3684409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUI97_RS16685 (HUI97_16685) yfbV 3674568..3675008 (-) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -
  HUI97_RS16690 (HUI97_16690) - 3675313..3676515 (+) 1203 WP_005349210.1 acetate kinase -
  HUI97_RS16695 (HUI97_16695) pta 3676570..3678750 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  HUI97_RS16700 (HUI97_16700) comEA/comE1 3679089..3679409 (+) 321 WP_206900469.1 ComEA family DNA-binding protein Machinery gene
  HUI97_RS16705 (HUI97_16705) galU 3679505..3680416 (+) 912 WP_100654493.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HUI97_RS16710 (HUI97_16710) - 3680630..3682027 (+) 1398 WP_064338739.1 peptide MFS transporter -
  HUI97_RS16715 (HUI97_16715) - 3682102..3683073 (-) 972 WP_206900470.1 response regulator -
  HUI97_RS16720 (HUI97_16720) - 3683314..3684012 (+) 699 WP_206900471.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11357.24 Da        Isoelectric Point: 10.0128

>NTDB_id=454994 HUI97_RS16700 WP_206900469.1 3679089..3679409(+) (comEA/comE1) [Aeromonas veronii strain 1708-29120]
MRKNSLPIIMLLSALPLFTHPSQAADKVVPKQAITVAAKQESGKVDINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=454994 HUI97_RS16700 WP_206900469.1 3679089..3679409(+) (comEA/comE1) [Aeromonas veronii strain 1708-29120]
ATGCGTAAAAACAGCCTGCCCATCATCATGTTGCTGTCAGCCCTCCCGTTGTTCACCCACCCCTCACAGGCCGCAGACAA
GGTCGTGCCCAAGCAGGCCATCACGGTTGCCGCCAAGCAGGAGAGCGGCAAAGTGGATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACAGGGACATGATAATAGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

46.087

100

0.5
  comEA Vibrio cholerae C6706

48.544

97.17

0.472
  comEA Vibrio cholerae strain A1552

48.544

97.17

0.472
  comE1/comEA Haemophilus influenzae Rd KW20

57.143

79.245

0.453
  comEA/celA/cilE Streptococcus pneumoniae Rx1

38.235

96.226

0.368
  comEA/celA/cilE Streptococcus pneumoniae D39

38.235

96.226

0.368
  comEA/celA/cilE Streptococcus pneumoniae R6

38.235

96.226

0.368