Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HUF98_RS01665 Genome accession   NZ_CP054560
Coordinates   352750..353568 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain YC103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347750..358568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS01630 (HUF98_01630) - 348332..348462 (-) 131 Protein_312 hypothetical protein -
  HUF98_RS01635 (HUF98_01635) rpoZ 348501..348779 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HUF98_RS01640 (HUF98_01640) gmk 348852..349481 (-) 630 WP_000015937.1 guanylate kinase -
  HUF98_RS01645 (HUF98_01645) ispH 349604..350554 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HUF98_RS01650 (HUF98_01650) fimU 350724..351197 (+) 474 WP_001214065.1 pilus assembly FimT family protein Machinery gene
  HUF98_RS01655 (HUF98_01655) pilV 351191..351751 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HUF98_RS01660 (HUF98_01660) pilW 351752..352753 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  HUF98_RS01665 (HUF98_01665) pilX 352750..353568 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HUF98_RS01670 (HUF98_01670) pilY1 353580..357434 (+) 3855 WP_179007487.1 PilC/PilY family type IV pilus protein Machinery gene
  HUF98_RS01675 (HUF98_01675) pilY2 357447..357929 (+) 483 WP_078202465.1 type IV pilin protein Machinery gene
  HUF98_RS01680 (HUF98_01680) pilE 357926..358351 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=453291 HUF98_RS01665 WP_000149374.1 352750..353568(+) (pilX) [Acinetobacter baumannii strain YC103]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=453291 HUF98_RS01665 WP_000149374.1 352750..353568(+) (pilX) [Acinetobacter baumannii strain YC103]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGCGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGCATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993