Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   HUF98_RS01660 Genome accession   NZ_CP054560
Coordinates   351752..352753 (+) Length   333 a.a.
NCBI ID   WP_000079197.1    Uniprot ID   A0A009TMX3
Organism   Acinetobacter baumannii strain YC103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346752..357753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS01630 (HUF98_01630) - 348332..348462 (-) 131 Protein_312 hypothetical protein -
  HUF98_RS01635 (HUF98_01635) rpoZ 348501..348779 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HUF98_RS01640 (HUF98_01640) gmk 348852..349481 (-) 630 WP_000015937.1 guanylate kinase -
  HUF98_RS01645 (HUF98_01645) ispH 349604..350554 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HUF98_RS01650 (HUF98_01650) fimU 350724..351197 (+) 474 WP_001214065.1 pilus assembly FimT family protein Machinery gene
  HUF98_RS01655 (HUF98_01655) pilV 351191..351751 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HUF98_RS01660 (HUF98_01660) pilW 351752..352753 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  HUF98_RS01665 (HUF98_01665) pilX 352750..353568 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HUF98_RS01670 (HUF98_01670) pilY1 353580..357434 (+) 3855 WP_179007487.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35803.50 Da        Isoelectric Point: 6.1010

>NTDB_id=453290 HUF98_RS01660 WP_000079197.1 351752..352753(+) (pilW) [Acinetobacter baumannii strain YC103]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=453290 HUF98_RS01660 WP_000079197.1 351752..352753(+) (pilW) [Acinetobacter baumannii strain YC103]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATTCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACTAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TMX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

100

100

1