Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   HUF98_RS01680 Genome accession   NZ_CP054560
Coordinates   357926..358351 (+) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain YC103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352926..363351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS01670 (HUF98_01670) pilY1 353580..357434 (+) 3855 WP_179007487.1 PilC/PilY family type IV pilus protein Machinery gene
  HUF98_RS01675 (HUF98_01675) pilY2 357447..357929 (+) 483 WP_078202465.1 type IV pilin protein Machinery gene
  HUF98_RS01680 (HUF98_01680) pilE 357926..358351 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  HUF98_RS01685 (HUF98_01685) rpsP 358498..358749 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HUF98_RS01690 (HUF98_01690) rimM 358769..359317 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  HUF98_RS01695 (HUF98_01695) trmD 359363..360103 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HUF98_RS01700 (HUF98_01700) rplS 360311..360679 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  HUF98_RS01705 (HUF98_01705) - 360731..361672 (-) 942 WP_140951738.1 lipase family alpha/beta hydrolase -
  HUF98_RS01710 (HUF98_01710) - 361787..362818 (-) 1032 WP_133239105.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=453294 HUF98_RS01680 WP_000788342.1 357926..358351(+) (pilE) [Acinetobacter baumannii strain YC103]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=453294 HUF98_RS01680 WP_000788342.1 357926..358351(+) (pilE) [Acinetobacter baumannii strain YC103]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518