Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HUF98_RS01655 Genome accession   NZ_CP054560
Coordinates   351191..351751 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain YC103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346191..356751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS01630 (HUF98_01630) - 348332..348462 (-) 131 Protein_312 hypothetical protein -
  HUF98_RS01635 (HUF98_01635) rpoZ 348501..348779 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HUF98_RS01640 (HUF98_01640) gmk 348852..349481 (-) 630 WP_000015937.1 guanylate kinase -
  HUF98_RS01645 (HUF98_01645) ispH 349604..350554 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HUF98_RS01650 (HUF98_01650) fimU 350724..351197 (+) 474 WP_001214065.1 pilus assembly FimT family protein Machinery gene
  HUF98_RS01655 (HUF98_01655) pilV 351191..351751 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HUF98_RS01660 (HUF98_01660) pilW 351752..352753 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  HUF98_RS01665 (HUF98_01665) pilX 352750..353568 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=453289 HUF98_RS01655 WP_002194578.1 351191..351751(+) (pilV) [Acinetobacter baumannii strain YC103]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=453289 HUF98_RS01655 WP_002194578.1 351191..351751(+) (pilV) [Acinetobacter baumannii strain YC103]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414