Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LL3_RS12960 Genome accession   NC_017190
Coordinates   2556383..2557150 (-) Length   255 a.a.
NCBI ID   WP_014470678.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LL3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2551383..2562150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL3_RS12940 (LL3_02718) - 2551585..2552397 (-) 813 WP_013352914.1 pyruvate, water dikinase regulatory protein -
  LL3_RS12945 (LL3_02719) ccpN 2552423..2553061 (-) 639 WP_014470676.1 transcriptional regulator CcpN -
  LL3_RS12950 (LL3_02720) glyS 2553162..2555201 (-) 2040 WP_014470677.1 glycine--tRNA ligase subunit beta -
  LL3_RS12955 (LL3_02721) glyQ 2555194..2556081 (-) 888 WP_013352917.1 glycine--tRNA ligase subunit alpha -
  LL3_RS12960 (LL3_02722) recO 2556383..2557150 (-) 768 WP_014470678.1 DNA repair protein RecO Machinery gene
  LL3_RS20695 (LL3_02723) - 2557187..2557330 (-) 144 WP_007408286.1 YqzL family protein -
  LL3_RS12965 (LL3_02724) era 2557485..2558390 (-) 906 WP_014470680.1 GTPase Era -
  LL3_RS12970 (LL3_02725) - 2558371..2558781 (-) 411 WP_013352920.1 cytidine deaminase -
  LL3_RS12975 (LL3_02726) - 2558904..2559278 (-) 375 WP_014470681.1 diacylglycerol kinase family protein -
  LL3_RS12980 (LL3_02727) ybeY 2559259..2559732 (-) 474 WP_013352922.1 rRNA maturation RNase YbeY -
  LL3_RS12985 (LL3_02728) - 2559733..2561865 (-) 2133 WP_013352923.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29300.98 Da        Isoelectric Point: 9.0137

>NTDB_id=45261 LL3_RS12960 WP_014470678.1 2556383..2557150(-) (recO) [Bacillus amyloliquefaciens LL3]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSRDG
TFHFSVRDNGFICHRCFGKDPYKVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKHLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=45261 LL3_RS12960 WP_014470678.1 2556383..2557150(-) (recO) [Bacillus amyloliquefaciens LL3]
ATGCTGACAAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGAGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTTATGGCAAGAGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGACTTGTTTTTGACGGCATATGCCGCTTTTATCGCTGAACTTACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAAGGGACTGACCCGGACGTGATCACCTTCA
TCGTTCAGATGAAAATGCTCGGCGTCATGGGACTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCCGGGACGGG
ACGTTTCATTTTTCGGTAAGAGATAATGGTTTTATCTGCCACCGCTGCTTTGGAAAGGATCCGTACAAAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCATTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTTATCGATCTGTATTATGAGGAATATTCAGGGCTTTATTTAAAGTCTAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGCACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

90.196

100

0.902

Multiple sequence alignment