Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   HRE60_RS09840 Genome accession   NZ_CP054153
Coordinates   2141556..2142791 (+) Length   411 a.a.
NCBI ID   WP_002883958.1    Uniprot ID   -
Organism   Streptococcus salivarius strain DB-B5     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2136556..2147791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS09810 (HRE60_09810) - 2137029..2139623 (+) 2595 WP_181670822.1 YfhO family protein -
  HRE60_RS09830 (HRE60_09830) - 2140172..2140855 (-) 684 WP_013991345.1 YoaK family protein -
  HRE60_RS09835 (HRE60_09835) rlmH 2140871..2141350 (-) 480 WP_002887123.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  HRE60_RS09840 (HRE60_09840) htrA 2141556..2142791 (+) 1236 WP_002883958.1 trypsin-like peptidase domain-containing protein Regulator
  HRE60_RS09845 (HRE60_09845) spo0J 2142858..2143625 (+) 768 WP_038676938.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 42931.09 Da        Isoelectric Point: 4.6266

>NTDB_id=451201 HRE60_RS09840 WP_002883958.1 2141556..2142791(+) (htrA) [Streptococcus salivarius strain DB-B5]
MKKFNWKKIVAPIAMLVIGLLGGLLGAFILLTAAGVSFTNSTDTGVKTAKTVYNNTTDTTKAVKKVQNAVVSVINYQEGS
SSDSLNELYGRIFGGDDSSDSSQDKSKDSDGLQVAGEGSGVIYKKDGKEAYIVTNNHVVDGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKVSSDKIKTVAEFADSNSLTVGEKAIAIGSPLGTEYANSVTEGIVSSLSRTVTMQNDNGETVSTNAIQT
DAAINPGNSGGALVNIEGQVIGINSSKISSTSAVAGSAVEGMGFAIPSNDVVEIINQLEKDGKVTRPALGISMADLNSLS
SSATSKLDLPDDVKSGVVVGSVQKGMPADGKLQENDVITEIDGKEISSKTDIQTNLYSHSIGDTIKVTFYRGKEKKTEEL
KLTKSTEDLSD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=451201 HRE60_RS09840 WP_002883958.1 2141556..2142791(+) (htrA) [Streptococcus salivarius strain DB-B5]
GTGAAAAAATTTAACTGGAAAAAAATAGTAGCGCCAATTGCAATGCTTGTTATTGGCTTGCTAGGTGGTTTGCTAGGTGC
CTTTATCCTACTAACAGCAGCAGGGGTATCTTTTACCAATTCAACAGATACAGGTGTTAAAACAGCTAAGACCGTATACA
ATAATACAACAGATACAACTAAAGCTGTTAAGAAAGTACAAAATGCCGTTGTTTCTGTCATCAATTACCAAGAAGGGTCA
TCTTCAGATTCTCTAAATGAACTTTATGGCCGTATCTTTGGTGGAGATGATAGTTCTGACTCTAGCCAAGACAAATCAAA
AGATTCTGATGGGTTACAAGTCGCTGGTGAAGGTTCCGGTGTTATCTATAAAAAGGATGGTAAAGAGGCTTATATCGTAA
CCAACAACCACGTTGTCGATGGCGCTAAAAAACTTGAAATCATGCTTTCAGATGGATCAAAAATTACTGGTGAACTCGTT
GGTAAAGATACTTACTCTGACCTAGCAGTTGTCAAAGTTTCTTCAGATAAAATTAAAACCGTAGCGGAATTTGCAGACTC
AAACTCTCTCACAGTCGGTGAGAAGGCAATTGCTATCGGTAGCCCACTTGGTACCGAATACGCCAACTCAGTAACAGAGG
GAATCGTTTCTAGCCTTAGCCGTACCGTAACTATGCAAAACGACAATGGTGAAACTGTTTCAACAAATGCTATCCAAACG
GATGCTGCCATTAACCCTGGTAACTCAGGTGGTGCCTTAGTCAATATCGAAGGACAAGTTATCGGTATTAACTCAAGTAA
AATTTCATCAACGTCAGCAGTCGCTGGCAGCGCCGTTGAAGGTATGGGATTTGCCATTCCATCAAACGATGTTGTCGAAA
TCATCAATCAATTGGAAAAAGACGGTAAAGTCACACGACCAGCCCTAGGAATCTCAATGGCCGATCTTAACAGCCTTTCT
AGCAGTGCAACTTCTAAATTAGATTTACCAGATGATGTGAAATCTGGAGTGGTAGTCGGCAGCGTTCAAAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAAAATGATGTTATCACTGAAATTGACGGTAAGGAAATCAGCTCAAAAACTGATATTCAAA
CTAATCTATACAGCCATAGTATCGGAGATACAATCAAGGTAACCTTCTATCGTGGTAAAGAGAAGAAAACTGAAGAACTT
AAATTAACAAAATCTACAGAAGACTTGTCTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

62.035

98.054

0.608

  htrA Streptococcus gordonii str. Challis substr. CH1

57.389

98.783

0.567

  htrA Streptococcus pneumoniae Rx1

54.523

99.513

0.543

  htrA Streptococcus pneumoniae R6

54.523

99.513

0.543

  htrA Streptococcus pneumoniae TIGR4

54.523

99.513

0.543

  htrA Streptococcus pneumoniae D39

54.523

99.513

0.543

  htrA Streptococcus mitis NCTC 12261

54.523

99.513

0.543