Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   FOC71_RS09420 Genome accession   NZ_CP053999
Coordinates   1860633..1862612 (-) Length   659 a.a.
NCBI ID   WP_003074400.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1855633..1867612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS09400 (FOC71_09400) amiF 1855826..1856749 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  FOC71_RS09405 (FOC71_09405) amiE 1856760..1857827 (-) 1068 WP_003074405.1 ABC transporter ATP-binding protein Regulator
  FOC71_RS09410 (FOC71_09410) amiD 1857836..1858762 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  FOC71_RS09415 (FOC71_09415) amiC 1858762..1860258 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  FOC71_RS09420 (FOC71_09420) amiA3 1860633..1862612 (-) 1980 WP_003074400.1 peptide ABC transporter substrate-binding protein Regulator
  FOC71_RS09425 (FOC71_09425) amiA3 1862809..1864785 (-) 1977 WP_003074398.1 peptide ABC transporter substrate-binding protein Regulator
  FOC71_RS09430 (FOC71_09430) - 1864944..1865633 (-) 690 WP_003074396.1 B3/4 domain-containing protein -
  FOC71_RS09435 (FOC71_09435) - 1865855..1867468 (-) 1614 WP_003074394.1 CTP synthase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73314.01 Da        Isoelectric Point: 8.3316

>NTDB_id=450040 FOC71_RS09420 WP_003074400.1 1860633..1862612(-) (amiA3) [Streptococcus intermedius strain FDAARGOS_769]
MKKSKIIALTAVALLATGTLAACSGSKAGSSNKTFSYVYEQDPDNLDYLTTGKASTSNITSNVIDGLLENDRYGNLIPSV
AKDWTVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADKKSDAIYLVQDSIKGLDAYMKGENKDFSAVGI
KAVDDYTVQYTLNRPESFWNSKTTMGVLAPVNAEFLKSKGNKFAQATDPSSILYNGPYLLKSITAKSSVEFAKNPNYWDK
KNVHIDHIKLSYYDGQDQDKLAKGFSDGSFTNAKVFPTSPSYASVSKKYKNNIVYTPQDATTYLVATNIDRQSYNHTSKT
TDAQKTSTKKALLNKDFRQAITFAFDRTAYASQVNGKDGATKMLRNLFVPPTFVQTDDKNFGELVKEKLVGYDESWKDVN
LNDAQDGLYNPTKAKEKLAKAKAALQADGVQFPIHIDMPVDQTATNKVQRVQSLKQSIEKNLGKENVVIDIQQMSKDDVN
NITYFAESAAAEDWDLSDNVGWSPDFQDPSTYLDVIKPSSGENTKTYLGFDSGKNNAAAAQVGMNEYEKLLNEAEKETTN
TNARYEKYAAAQAWLTDNALVIPTTTLTGRPILSRTVPFTNPFAWSGNKGNSEIILYKYLELQDEPVTQDQYKKAMTKWN
KERSKSNKKAQEELADHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=450040 FOC71_RS09420 WP_003074400.1 1860633..1862612(-) (amiA3) [Streptococcus intermedius strain FDAARGOS_769]
ATGAAGAAAAGTAAAATCATTGCCTTAACGGCTGTTGCCTTACTCGCGACGGGGACATTAGCGGCTTGTTCTGGTTCTAA
AGCAGGTTCTAGTAACAAAACGTTTTCGTATGTTTATGAACAAGATCCGGATAATCTAGATTATCTGACAACTGGGAAGG
CCTCTACTTCAAACATTACAAGTAACGTCATTGATGGCCTCTTGGAAAATGACCGTTATGGGAACTTAATTCCTTCTGTG
GCAAAAGATTGGACCGTCTCTAAAGACGGCTTGACTTACACTTACAAACTTCGCAAGGGAGTTAAATGGTATACTTCAGA
AGGGGAAGAGTATGCAGAAGTTAAAGCGCAAGACTTTGTGACAGGTTTGAAACACGCTGCAGATAAGAAATCCGATGCCA
TTTATTTGGTGCAAGATTCCATTAAAGGTTTGGATGCTTATATGAAAGGTGAAAATAAAGATTTTTCTGCTGTTGGTATT
AAAGCAGTTGATGATTATACTGTCCAATACACGCTTAATCGACCAGAAAGCTTTTGGAACTCGAAAACAACAATGGGAGT
TTTAGCACCAGTTAATGCAGAATTTTTGAAATCAAAAGGCAATAAATTTGCGCAAGCAACAGATCCATCTAGTATTCTTT
ACAATGGACCTTACTTGCTAAAATCTATCACAGCGAAATCATCTGTTGAATTTGCTAAAAATCCAAACTATTGGGATAAG
AAAAATGTGCACATTGATCACATCAAGTTATCTTACTATGATGGTCAGGATCAGGATAAACTGGCTAAAGGATTTAGCGA
TGGCTCATTTACCAATGCCAAAGTATTTCCAACCAGTCCAAGTTATGCTTCTGTCAGCAAGAAATACAAAAACAACATCG
TTTATACTCCACAAGATGCAACCACTTATCTAGTGGCTACAAACATTGATCGTCAATCTTACAATCATACATCAAAGACA
ACAGATGCTCAAAAGACATCTACTAAGAAAGCATTATTGAATAAAGATTTCCGTCAAGCAATTACCTTTGCATTTGACCG
TACTGCTTATGCTTCACAGGTGAATGGTAAAGACGGTGCGACGAAGATGCTTCGTAATCTCTTTGTACCGCCAACTTTTG
TTCAAACAGATGATAAGAACTTTGGAGAATTGGTCAAAGAAAAATTAGTTGGTTACGATGAAAGTTGGAAAGATGTCAAT
TTAAATGATGCGCAAGACGGGCTTTACAATCCAACGAAAGCCAAGGAAAAATTAGCTAAAGCCAAAGCAGCGCTTCAAGC
AGACGGTGTTCAATTCCCGATTCACATTGATATGCCAGTTGACCAAACGGCAACGAATAAAGTTCAACGTGTACAATCAT
TGAAACAATCGATTGAAAAGAATCTTGGCAAAGAAAATGTTGTGATTGACATTCAACAAATGTCTAAAGACGATGTAAAT
AATATCACTTACTTTGCTGAATCTGCTGCTGCAGAGGATTGGGATCTTTCAGACAATGTTGGTTGGAGTCCAGATTTCCA
AGATCCATCTACTTATCTTGATGTCATCAAGCCTTCAAGTGGTGAAAACACTAAGACTTATCTAGGATTTGATTCAGGTA
AAAATAATGCTGCTGCGGCACAAGTTGGTATGAATGAATATGAAAAATTACTGAATGAGGCCGAAAAAGAAACCACTAAT
ACGAATGCACGCTATGAAAAATATGCTGCAGCCCAAGCTTGGTTGACTGATAATGCTTTGGTTATTCCGACAACAACCTT
GACTGGTCGTCCAATTCTTTCTCGCACAGTGCCATTTACTAATCCATTTGCTTGGTCAGGAAACAAAGGGAATAGTGAAA
TCATTCTATATAAATATCTTGAACTCCAAGATGAGCCTGTTACACAAGATCAGTACAAGAAAGCTATGACTAAATGGAAT
AAAGAGCGATCAAAATCTAATAAAAAAGCTCAAGAAGAACTTGCAGATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

61.818

100

0.619
  amiA3 Streptococcus thermophilus LMG 18311

61.212

100

0.613
  amiA Streptococcus salivarius strain HSISS4

60.909

100

0.61