Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FOC71_RS09400 Genome accession   NZ_CP053999
Coordinates   1855826..1856749 (-) Length   307 a.a.
NCBI ID   WP_003074407.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1850826..1861749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS09385 (FOC71_09385) - 1852395..1853849 (+) 1455 WP_003074412.1 sucrose-6-phosphate hydrolase -
  FOC71_RS09390 (FOC71_09390) - 1853830..1854795 (+) 966 WP_003074411.1 LacI family DNA-binding transcriptional regulator -
  FOC71_RS09395 (FOC71_09395) - 1854881..1855699 (-) 819 WP_003074409.1 Cof-type HAD-IIB family hydrolase -
  FOC71_RS09400 (FOC71_09400) amiF 1855826..1856749 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  FOC71_RS09405 (FOC71_09405) amiE 1856760..1857827 (-) 1068 WP_003074405.1 ABC transporter ATP-binding protein Regulator
  FOC71_RS09410 (FOC71_09410) amiD 1857836..1858762 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  FOC71_RS09415 (FOC71_09415) amiC 1858762..1860258 (-) 1497 WP_003074402.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34811.89 Da        Isoelectric Point: 6.1198

>NTDB_id=450036 FOC71_RS09400 WP_003074407.1 1855826..1856749(-) (amiF) [Streptococcus intermedius strain FDAARGOS_769]
MSEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGDIFFDGKRINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDADQHDYSVDKPEMVEIRPGHFVWANKAEVEKYNKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=450036 FOC71_RS09400 WP_003074407.1 1855826..1856749(-) (amiF) [Streptococcus intermedius strain FDAARGOS_769]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTCGGAGAAGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCGCTTGTAGGAGAGTCCGGTTCTGGTAAAACAACAATCGGACGCG
CGATTATTGGTTTGAATAATACTAGTAAGGGAGATATCTTCTTTGATGGAAAAAGAATCAATGGTAAGAAATCAAAAGAA
GAAGAATCAGAAATCATTCGCAAAATTCAGATGATTTTCCAAGATCCTGCTGCTAGTTTGAATGAACGTGCGACGGTTGA
TTACATTATTTCAGAAGGTCTGTATAATTTTCATCTGTTTAAAGATGAAGAAGAACGTCAGAAAAAAGTAAAAGATATTA
TTCATGAGGTAGGGCTGTTGTCAGAGCATTTAACTCGCTATCCGCATGAATTCTCAGGTGGTCAGCGTCAGCGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAACCAGACTTTGTGATTGCCGATGAGCCAATTTCAGCACTTGACGTGTCTGTTCGTGC
TCAAGTTTTAAATCTTCTTAAGAAATTCCAAAAAGATCTGGGCTTGACCTATCTTTTCATTGCTCATGACCTTTCTGTAG
TGCGTTTTATCTCAGATCGGATTGCTGTTATTTATAAGGGAGTGATTGTTGAAGTTGCTGAAACAGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACTCAGTCTTTATTGTCAGCTGTCCCAATTCCGGATCCGATTTTGGAACGGAAGAAAGTATT
GAAAGTCTACGATGCTGATCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCGGGGCACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAGTATAATAAGGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus salivarius strain HSISS4

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86