Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   I5367_RS13745 Genome accession   NZ_CP065539
Coordinates   2833229..2833933 (-) Length   234 a.a.
NCBI ID   WP_012118225.1    Uniprot ID   A7Z7U3
Organism   Bacillus amyloliquefaciens strain DGL1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2828229..2838933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5367_RS13725 (I5367_13725) cysK 2828237..2829208 (+) 972 WP_020954278.1 cysteine synthase A -
  I5367_RS13730 (I5367_13730) pepV 2829246..2830637 (-) 1392 WP_012118222.1 dipeptidase PepV -
  I5367_RS13735 (I5367_13735) - 2830733..2832037 (+) 1305 WP_012118223.1 NCS2 family permease -
  I5367_RS13740 (I5367_13740) - 2832072..2833232 (-) 1161 WP_012118224.1 ABC transporter permease -
  I5367_RS13745 (I5367_13745) pptA 2833229..2833933 (-) 705 WP_012118225.1 ABC transporter ATP-binding protein Regulator
  I5367_RS13750 (I5367_13750) - 2834214..2834435 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  I5367_RS13755 (I5367_13755) - 2834563..2835282 (-) 720 WP_007408795.1 pseudouridine synthase -
  I5367_RS13760 (I5367_13760) - 2835339..2836976 (-) 1638 WP_012118226.1 polysaccharide biosynthesis protein -
  I5367_RS13765 (I5367_13765) - 2837184..2838449 (+) 1266 WP_023357091.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25756.46 Da        Isoelectric Point: 4.4916

>NTDB_id=450036 I5367_RS13745 WP_012118225.1 2833229..2833933(-) (pptA) [Bacillus amyloliquefaciens strain DGL1]
MGELLNANIVCAGYADRPKVISDVSLSVNAGEITGLIGANGAGKSTVIKAVLGLSRDIEGGIEWNDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGIEGEECRERAGRLLEEFSLTSVKHDLPSGFSKGMQQKLMLIQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGTLEELQEKTGSRSLLDCFYSAVRSSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=450036 I5367_RS13745 WP_012118225.1 2833229..2833933(-) (pptA) [Bacillus amyloliquefaciens strain DGL1]
TTGGGAGAATTATTGAATGCAAACATTGTCTGCGCCGGTTATGCTGACAGGCCGAAGGTGATTTCTGATGTATCTCTGTC
AGTCAACGCTGGTGAAATTACCGGTTTAATCGGAGCGAACGGCGCGGGGAAAAGCACAGTGATAAAGGCGGTTCTCGGGC
TGTCCCGGGATATAGAGGGCGGAATTGAGTGGAATGATTCATCTTATGCTTACATACCGGAGCGTCCGAGTTTTTATGAT
GAACTGACGCTTTGGGAGCATCTCGAGCTGACCGGGTCATTGCGGGGTATAGAAGGAGAAGAATGCCGTGAGCGGGCAGG
GCGGCTGCTTGAAGAGTTTTCGCTGACGTCTGTAAAACATGATTTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAAT
TGATGCTCATACAGGCATTTTTGGCGAAGCCGGATATTTACATCATTGATGAGCCTTTTATCGGACTTGATCCGATCTCA
ACGAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGGGGCGCGGGGATTTTGATGTGCACTCATGTTCTGGATAC
GGCGGAAAAAATCTGCGACCGGTTTTATTTGCTGGATCAGGGCGCTCTGCTTCTTCAAGGCACGTTAGAGGAGCTTCAGG
AAAAAACGGGGAGCCGTTCACTGCTGGATTGCTTTTATTCAGCGGTTCGGAGCAGTCAGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z7U3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

45

100

0.462
  pptA Streptococcus thermophilus LMD-9

44.167

100

0.453