Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FOC71_RS09410 Genome accession   NZ_CP053999
Coordinates   1857836..1858762 (-) Length   308 a.a.
NCBI ID   WP_003074404.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1852836..1863762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS09390 (FOC71_09390) - 1853830..1854795 (+) 966 WP_003074411.1 LacI family DNA-binding transcriptional regulator -
  FOC71_RS09395 (FOC71_09395) - 1854881..1855699 (-) 819 WP_003074409.1 Cof-type HAD-IIB family hydrolase -
  FOC71_RS09400 (FOC71_09400) amiF 1855826..1856749 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  FOC71_RS09405 (FOC71_09405) amiE 1856760..1857827 (-) 1068 WP_003074405.1 ABC transporter ATP-binding protein Regulator
  FOC71_RS09410 (FOC71_09410) amiD 1857836..1858762 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  FOC71_RS09415 (FOC71_09415) amiC 1858762..1860258 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  FOC71_RS09420 (FOC71_09420) amiA3 1860633..1862612 (-) 1980 WP_003074400.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34489.54 Da        Isoelectric Point: 9.8589

>NTDB_id=450038 FOC71_RS09410 WP_003074404.1 1857836..1858762(-) (amiD) [Streptococcus intermedius strain FDAARGOS_769]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=450038 FOC71_RS09410 WP_003074404.1 1857836..1858762(-) (amiD) [Streptococcus intermedius strain FDAARGOS_769]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCACCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCTCAATATTGGTTTGGTACAGATAGTAACGGGAAATCCCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCGTGATTAACCTTGTGATTGGTATTGTTATTGGTGGCATCTGGGGAA
TTTCAAAAACTGTCGATCGTGTGATGATTGAGATTTATAATATTATTTCTAACATCCCACCGCTTTTGATTGTCATTGTC
TTGACGTACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCCATGACGATTACTGGTTGGATTGGGATTGCTTACAA
CATTCGTATCCAAATTCTACGTTATCGTGATTTAGAATACAACCTCGCCAGTCGTACCTTGGGAACGCCAACGCTTAAAA
TTATTGTGAAAAATATTATGCCACAATTGGTTTCTGTCATTGTGACTACTGCTTCACAATTACTACCAAGTTTCATTTCA
TACGAAGCCTTTCTATCTTTCTTTGGTTTGGGGCTTCCTGTGACGGTGCCAAGTTTAGGGCGTTTGATTTCAGATTATTC
ACAAAACGTTACAACAAATGCATATCTTTTCTGGATTCCATTGACAACTTTAATCTTGGTTTCCCTTTCATTATTCGTTG
TCGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.039

100

0.86
  amiD Streptococcus thermophilus LMG 18311

83.442

100

0.834
  amiD Streptococcus thermophilus LMD-9

83.442

100

0.834