Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   FOC71_RS09415 Genome accession   NZ_CP053999
Coordinates   1858762..1860258 (-) Length   498 a.a.
NCBI ID   WP_003074402.1    Uniprot ID   T1ZGK9
Organism   Streptococcus intermedius strain FDAARGOS_769     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1853762..1865258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC71_RS09390 (FOC71_09390) - 1853830..1854795 (+) 966 WP_003074411.1 LacI family DNA-binding transcriptional regulator -
  FOC71_RS09395 (FOC71_09395) - 1854881..1855699 (-) 819 WP_003074409.1 Cof-type HAD-IIB family hydrolase -
  FOC71_RS09400 (FOC71_09400) amiF 1855826..1856749 (-) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  FOC71_RS09405 (FOC71_09405) amiE 1856760..1857827 (-) 1068 WP_003074405.1 ABC transporter ATP-binding protein Regulator
  FOC71_RS09410 (FOC71_09410) amiD 1857836..1858762 (-) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  FOC71_RS09415 (FOC71_09415) amiC 1858762..1860258 (-) 1497 WP_003074402.1 ABC transporter permease Regulator
  FOC71_RS09420 (FOC71_09420) amiA3 1860633..1862612 (-) 1980 WP_003074400.1 peptide ABC transporter substrate-binding protein Regulator
  FOC71_RS09425 (FOC71_09425) amiA3 1862809..1864785 (-) 1977 WP_003074398.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55912.09 Da        Isoelectric Point: 10.0131

>NTDB_id=450039 FOC71_RS09415 WP_003074402.1 1858762..1860258(-) (amiC) [Streptococcus intermedius strain FDAARGOS_769]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKTNYENTIFERMGYIDYYDTKELQEKAS
KENPSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYL
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFIHQNFVRLNLGTSYPTYANLPVLQVISQGQGQTQTSEVQFPTGKKTSSV
NIYTRTYKSPKHADVRDVANYGKDDPYTATESNYQYPSMLVSSSIVGLIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSAIGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEQEISNKHIFKNAMVPLVSSIPGAIIGVITGATLTETIFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTMLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=450039 FOC71_RS09415 WP_003074402.1 1858762..1860258(-) (amiC) [Streptococcus intermedius strain FDAARGOS_769]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACATTGACTTACACCATTAT
CTATACTATGGTGCCAAGAAAGTTGATTTTTAAACAGGATCCAAACTATAATAAAATAGCTACAACTCCTGATAAAAAAA
CTAATTATGAAAATACAATTTTTGAGCGTATGGGTTACATTGACTACTATGATACGAAGGAATTACAAGAAAAAGCTAGT
AAAGAGAATCCTTCTGTAACAGTAGAACCTACTAATGCAAATAAAAAAATCTATGAAGCTTACATCAAAAAGTTGGGGCG
TGGTTGGAAATTGCAGCAATTCAAAGAAAGTAAGCAATTTTATGCAACTCGAGAGGTTCCGGTCTATGAACGCGTTCTTG
GTTTCTATGGTAATTTGATTCAAATTGATCATACAGGGGCTGTGAAAGATGCTTCTAATCCAAACTTGAAGCGTTATCTT
CGTATTGAAAATGATCCTGCTATTGGTTGGTCTGTTGTTGGTTCTGGAACGAAACATAAATACTTGTTATATTTCAACAG
TCAATTTCCATTTATCCATCAAAATTTTGTACGATTAAATTTGGGAACATCTTATCCAACCTATGCAAATCTTCCTGTTC
TACAAGTTATTTCACAAGGGCAAGGTCAAACGCAGACTTCAGAAGTTCAATTTCCAACAGGAAAGAAAACATCGTCTGTT
AATATTTACACGCGTACCTATAAATCTCCAAAACACGCTGATGTGCGAGATGTTGCTAATTACGGGAAAGACGATCCTTA
TACAGCAACAGAAAGCAACTATCAGTATCCATCAATGCTTGTAAGTTCTTCAATTGTTGGTTTGATTGGTCTAGCATTGT
CTTACTTAATCGCTGTGCCGTTAGGCTCTTATATGGCTCGTTTTAAGAATACATTGTTTGACAGTATTTCAACTGGTGCT
TTGACTTTCTTAATGTCGCTGCCAACCATTGCTTTGGTTTATATCATTCGCTTGATTGGTTCAGCAATAGGATTGCCAGA
CTCCTTCCCTATTTTAGGTGCAGGAGATTGGCGTTCTTATGTGTTGCCAGCAGTCATTCTTGGACTGTTGAGTGCGCCTT
GGACTGCTGTTTGGATTCGCCGTTATATGATTGACCTGCAATCACAAGACTTTGTTCGTTTTGCCCGGGCAAAAGGTCTC
TCTGAACAAGAAATTTCAAATAAACATATTTTTAAAAACGCTATGGTACCACTTGTATCCAGCATACCTGGTGCTATTAT
TGGAGTTATCACAGGTGCAACCTTGACTGAAACAATTTTTGCTTTCCCTGGAATGGGTAAAATGCTGATTGACTCTGTCA
AAGCATCTAATAATTCTATGGTCGTTGGTCTTGTATTTATCTTTACATGTCTATCTATCTTTGCTCTTCTATTGGGTGAT
ATTCTGATGACCATGCTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZGK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

80.522

100

0.805
  amiC Streptococcus thermophilus LMG 18311

79.518

100

0.795
  amiC Streptococcus thermophilus LMD-9

79.317

100

0.793