Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   FOC73_RS06740 Genome accession   NZ_CP053998
Coordinates   1380179..1381078 (+) Length   299 a.a.
NCBI ID   WP_002883753.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1375179..1386078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS06720 (FOC73_06720) trkA 1376350..1377699 (-) 1350 WP_002883814.1 Trk system potassium transporter TrkA -
  FOC73_RS06725 (FOC73_06725) - 1377990..1378499 (+) 510 WP_002883735.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  FOC73_RS06730 (FOC73_06730) - 1378789..1379346 (+) 558 WP_002883726.1 ECF transporter S component -
  FOC73_RS06735 (FOC73_06735) - 1379349..1379999 (+) 651 WP_002883719.1 phosphatase PAP2 family protein -
  FOC73_RS06740 (FOC73_06740) comR 1380179..1381078 (+) 900 WP_002883753.1 helix-turn-helix transcriptional regulator Regulator
  FOC73_RS06745 (FOC73_06745) comA 1381253..1383349 (+) 2097 WP_002883724.1 peptide cleavage/export ABC transporter Regulator
  FOC73_RS06750 (FOC73_06750) - 1383474..1383806 (+) 333 WP_002883800.1 DUF805 domain-containing protein -
  FOC73_RS06755 (FOC73_06755) - 1383858..1385252 (-) 1395 WP_227826957.1 DUF4153 domain-containing protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35105.55 Da        Isoelectric Point: 5.2183

>NTDB_id=449959 FOC73_RS06740 WP_002883753.1 1380179..1381078(+) (comR) [Streptococcus salivarius strain FDAARGOS_771]
MNIKDSIGLRIKTERELQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKSMTDLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKAKLALIEEVYEKFFELLSEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKRKKKFST
NDLLVIDYYFFHLYGRKQYDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKEAAENYDKAIMFASVLEDSVLEESIRAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=449959 FOC73_RS06740 WP_002883753.1 1380179..1381078(+) (comR) [Streptococcus salivarius strain FDAARGOS_771]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACTCCAGCAGATGTCACGTGAAGTACTATGTTT
AGATGGTGCGGAATTAACTGTTCGTCAGTTAATTCGTATTGAAAAGGGAGAATCTCTCCCGTCTTTGGATAAATTATCTT
ATATCGCCAAACGTTTAGGAAAAAGTATGACTGATTTATTGGATCATGACAATATTACTATCCCTGACGAATACTACGAG
ATGAAGAATCGTTTGATTAAGTTTCCAACGTATAGAAATCCAGAAAGAATAAAGGCTAAACTTGCCTTAATTGAGGAGGT
CTACGAGAAATTCTTTGAACTTCTCTCAGAAGAAGAATTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
GTTGGGAAGAGAGTCCAAAAGTTGAGGAGATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAAGAAATTCTCAACT
AACGATTTATTAGTTATTGACTATTATTTCTTCCATCTTTATGGAAGAAAACAGTATGATAAAAAACTTTTTGAAAGAAT
CGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGACGATGTTTATAATATTGTTTTATTTAATGATTTGATGGCTATCG
CTGCTTTGAAGATTTTTCATAATTCCTTCTCAGACTTCTTAACAGTTGTGGATAAAGCCTTAGCTGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAGTGTTTTTGTTCTCAAAGCCAAATATGAACTTCTTCATAAAGGAAACAAGAAAGAGGC
TGCAGAAAATTATGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTTTTAGAGGAAAGTATAAGGGCAGGAA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius SK126

100

100

1
  comR Streptococcus salivarius strain HSISS4

97.993

100

0.98
  comR Streptococcus thermophilus LMG 18311

94.649

100

0.946
  comR Streptococcus thermophilus LMD-9

93.98

100

0.94
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

41.137

100

0.411