Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FOC73_RS02620 Genome accession   NZ_CP053998
Coordinates   585140..587110 (-) Length   656 a.a.
NCBI ID   WP_002884369.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 580140..592110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS02600 (FOC73_02600) amiF 580643..581572 (-) 930 WP_002884751.1 ATP-binding cassette domain-containing protein Regulator
  FOC73_RS02605 (FOC73_02605) amiE 581565..582650 (-) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  FOC73_RS02610 (FOC73_02610) amiD 582660..583586 (-) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  FOC73_RS02615 (FOC73_02615) amiC 583586..585079 (-) 1494 WP_002884549.1 ABC transporter permease Regulator
  FOC73_RS02620 (FOC73_02620) amiA 585140..587110 (-) 1971 WP_002884369.1 peptide ABC transporter substrate-binding protein Regulator
  FOC73_RS02625 (FOC73_02625) amiA 587291..589261 (-) 1971 WP_002884208.1 peptide ABC transporter substrate-binding protein Regulator
  FOC73_RS02630 (FOC73_02630) pta 589497..590480 (-) 984 WP_002884509.1 phosphate acetyltransferase -
  FOC73_RS02635 (FOC73_02635) - 590494..591390 (-) 897 WP_002884380.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72906.23 Da        Isoelectric Point: 5.1980

>NTDB_id=449927 FOC73_RS02620 WP_002884369.1 585140..587110(-) (amiA) [Streptococcus salivarius strain FDAARGOS_771]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPSIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFNSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNILVKPDFVYAGDKSFGDLVTEKMASYGDEWSGVNL
KDSQDGIFNADKAKTEFNKAKEALQAQGVQFPIHLDLPVDQAAKTTVARAQSLKQSVEKTLGKENVVVDVNQMSQDDLLN
STLYASNAAAEDWDINISVAWAPDYEDPSTFLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=449927 FOC73_RS02620 WP_002884369.1 585140..587110(-) (amiA) [Streptococcus salivarius strain FDAARGOS_771]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATGTTTATACTGCTGATCCTGAAACATTGGACTATCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAACGATAAATATGGTAACTTGGTACCTTCTATTGCC
AAGGACTGGACTGTTTCAGCTGATGGTTTGACTTATACTTACAAACTTCGTAAGGGAGTTAAATGGTACACTTCAGATGG
TGAAGAGTATGCAGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGATTTCTCTAAAGTTGGCGTTAAA
GCTCTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAGTTAGCTAAAAATGAAAACTACTGGGATAAGAAA
AATGTCCACTTCGATGGCATTAAACTTTCTTTCTACGATGCTTCAGACCAAGAATCGCTTGTTCGTAATTTCACTGATGG
CGCTTATAGCCAAGCACGTCTATATCCAACAAGCTCAAACTTTAATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAATCATACATCTAAGAAGACT
GATGCTGAGAAAGATTCAACTAAGAAAGCTCTTCTTAACAAAGATTTCCGTCAATCAGTTAACTTTGCTATTGACCGTAC
AGCTTATTCAGCACAACTTAATGGTGAAAAAGGTGCAGCCCTTGCTGTTCGTAACATTCTTGTGAAACCTGATTTTGTTT
ATGCTGGTGACAAGTCATTCGGTGATTTGGTAACTGAAAAGATGGCTTCATATGGTGATGAGTGGTCAGGTGTCAACCTT
AAAGACAGTCAAGATGGTATCTTCAACGCTGATAAGGCTAAGACTGAATTTAATAAGGCCAAGGAAGCCCTTCAAGCACA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCTGTTGACCAAGCGGCTAAAACAACGGTTGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAAGACACTCGGTAAAGAAAATGTTGTTGTAGACGTTAACCAAATGTCTCAAGATGATCTTCTTAAC
AGTACTTTGTATGCTTCTAACGCAGCAGCAGAAGACTGGGATATCAATATTTCAGTTGCTTGGGCGCCTGACTACGAAGA
CCCATCAACATTCCTTGATATCTTCAAGACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAATA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGATAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGATATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTTAACAAGGG
GGCTGCGCCAATGGTAGCTCGTTTGACACCATTCTCAGGTGCTTACTCTCAAGTAGGACCTAAGGGTTCTGACAGATACT
TCAAGTACCTTGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCTCGCGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.152

100

0.752
  amiA3 Streptococcus thermophilus LMG 18311

74.886

100

0.75
  amiA3 Streptococcus thermophilus LMD-9

74.886

100

0.75