Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FOC73_RS02610 Genome accession   NZ_CP053998
Coordinates   582660..583586 (-) Length   308 a.a.
NCBI ID   WP_002884564.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 577660..588586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS02580 (FOC73_02580) - 577739..578533 (-) 795 WP_002884689.1 HAD-IIB family hydrolase -
  FOC73_RS02585 (FOC73_02585) - 578715..579092 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  FOC73_RS02590 (FOC73_02590) - 579097..579795 (+) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  FOC73_RS02595 (FOC73_02595) - 579807..580592 (+) 786 WP_002884628.1 hypothetical protein -
  FOC73_RS02600 (FOC73_02600) amiF 580643..581572 (-) 930 WP_002884751.1 ATP-binding cassette domain-containing protein Regulator
  FOC73_RS02605 (FOC73_02605) amiE 581565..582650 (-) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  FOC73_RS02610 (FOC73_02610) amiD 582660..583586 (-) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  FOC73_RS02615 (FOC73_02615) amiC 583586..585079 (-) 1494 WP_002884549.1 ABC transporter permease Regulator
  FOC73_RS02620 (FOC73_02620) amiA 585140..587110 (-) 1971 WP_002884369.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34609.70 Da        Isoelectric Point: 9.7054

>NTDB_id=449925 FOC73_RS02610 WP_002884564.1 582660..583586(-) (amiD) [Streptococcus salivarius strain FDAARGOS_771]
MASIDKSKFQFVKRDDFASETIDAPAYSYWKSVMRQFFKKKSTTVMLGILIAIILMSFIYPMFSKFDFNDVSKVNDFSVR
YVHPNAQYWFGTDSNGKSLFDSVWFGARNSILIAVIATFLNVAIGLVVGAVWGISKTFDMIMMEIYNIISNIPALLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRTLGTPTPKIVVKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=449925 FOC73_RS02610 WP_002884564.1 582660..583586(-) (amiD) [Streptococcus salivarius strain FDAARGOS_771]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCGCCGGCCTA
TTCATACTGGAAATCGGTGATGCGTCAGTTCTTCAAGAAAAAGTCAACAACTGTTATGTTGGGTATCTTGATTGCTATCA
TTTTGATGAGCTTTATCTACCCAATGTTTTCAAAATTTGACTTCAATGACGTGTCTAAGGTTAATGACTTTAGTGTGCGT
TATGTGCATCCAAATGCTCAATACTGGTTCGGTACAGACAGTAATGGTAAGTCTCTCTTTGACAGTGTTTGGTTTGGAGC
TCGTAATTCTATCCTTATTGCTGTTATCGCTACCTTCCTTAACGTTGCTATTGGTTTAGTCGTTGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAACATTCCTGCCCTCCTTGTCGTTATCGTC
TTGACTTACTCATTGGGTGCTGGTTTCTGGAACATGATCTTTGCCATGACTGTCACAGGTTGGATTGGTATTGCCTATAC
TATCCGTATTCAAATCATGCGTTACCGTGATTTGGAGTACAACTTGGCTTCTCGTACTTTGGGAACACCAACTCCTAAGA
TTGTGGTTAAAAATATCATGCCACAACTTGTATCGGTTATCGTGACTATGGCTAGTCAGCTCTTGCCAGGATTTATCTCT
TACGAAGCTTTCCTTTCTTACTTTGGTTTGGGGCTTCCCGTTACGACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCTTATCTCTTCTGGATTCCATTGACTACCTTGATCCTCGTTTCCCTCTCTCTCTTTATTG
TCGGTCAAAACTTGGCGGATGCCAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

98.701

100

0.987
  amiD Streptococcus thermophilus LMG 18311

96.104

100

0.961
  amiD Streptococcus thermophilus LMD-9

96.104

100

0.961