Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   FOC73_RS02615 Genome accession   NZ_CP053998
Coordinates   583586..585079 (-) Length   497 a.a.
NCBI ID   WP_002884549.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 578586..590079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS02585 (FOC73_02585) - 578715..579092 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  FOC73_RS02590 (FOC73_02590) - 579097..579795 (+) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  FOC73_RS02595 (FOC73_02595) - 579807..580592 (+) 786 WP_002884628.1 hypothetical protein -
  FOC73_RS02600 (FOC73_02600) amiF 580643..581572 (-) 930 WP_002884751.1 ATP-binding cassette domain-containing protein Regulator
  FOC73_RS02605 (FOC73_02605) amiE 581565..582650 (-) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  FOC73_RS02610 (FOC73_02610) amiD 582660..583586 (-) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  FOC73_RS02615 (FOC73_02615) amiC 583586..585079 (-) 1494 WP_002884549.1 ABC transporter permease Regulator
  FOC73_RS02620 (FOC73_02620) amiA 585140..587110 (-) 1971 WP_002884369.1 peptide ABC transporter substrate-binding protein Regulator
  FOC73_RS02625 (FOC73_02625) amiA 587291..589261 (-) 1971 WP_002884208.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55938.72 Da        Isoelectric Point: 10.0307

>NTDB_id=449926 FOC73_RS02615 WP_002884549.1 583586..585079(-) (amiC) [Streptococcus salivarius strain FDAARGOS_771]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTMIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=449926 FOC73_RS02615 WP_002884549.1 583586..585079(-) (amiC) [Streptococcus salivarius strain FDAARGOS_771]
ATGAAAAAATATATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGTATGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGCTGGCGTTTACATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTACTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATTGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATACTTGCTTTACTTTAACAG
TCAGTTTCCATTTGTTCACCAAAACTTTGTTAAGATGAACCTTGGTACATCTTATCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACGCAAGGCCAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAGATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCGAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCTACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGTTCTGCTATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACACTCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATCCGTTTGATTGGTTCTGAGATTGGTCTTCCAGACTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCTATTTGGATTCGTCGTTATATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTTGCCTACCCTGGTATGGGTAAAATGTTGATTGACTCTGTCCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATGATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

99.195

100

0.992
  amiC Streptococcus thermophilus LMG 18311

98.189

100

0.982
  amiC Streptococcus thermophilus LMD-9

97.787

100

0.978