Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   FOC73_RS02605 Genome accession   NZ_CP053998
Coordinates   581565..582650 (-) Length   361 a.a.
NCBI ID   WP_002884363.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 576565..587650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS02575 (FOC73_02575) - 576928..577746 (-) 819 WP_002884514.1 Cof-type HAD-IIB family hydrolase -
  FOC73_RS02580 (FOC73_02580) - 577739..578533 (-) 795 WP_002884689.1 HAD-IIB family hydrolase -
  FOC73_RS02585 (FOC73_02585) - 578715..579092 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  FOC73_RS02590 (FOC73_02590) - 579097..579795 (+) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  FOC73_RS02595 (FOC73_02595) - 579807..580592 (+) 786 WP_002884628.1 hypothetical protein -
  FOC73_RS02600 (FOC73_02600) amiF 580643..581572 (-) 930 WP_002884751.1 ATP-binding cassette domain-containing protein Regulator
  FOC73_RS02605 (FOC73_02605) amiE 581565..582650 (-) 1086 WP_002884363.1 ABC transporter ATP-binding protein Regulator
  FOC73_RS02610 (FOC73_02610) amiD 582660..583586 (-) 927 WP_002884564.1 oligopeptide ABC transporter permease OppC Regulator
  FOC73_RS02615 (FOC73_02615) amiC 583586..585079 (-) 1494 WP_002884549.1 ABC transporter permease Regulator
  FOC73_RS02620 (FOC73_02620) amiA 585140..587110 (-) 1971 WP_002884369.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39919.63 Da        Isoelectric Point: 4.6526

>NTDB_id=449924 FOC73_RS02605 WP_002884363.1 581565..582650(-) (amiE) [Streptococcus salivarius strain FDAARGOS_771]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGQDL
TKLKSHQDWAPIRGAKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVEKPAVIQNLHEKIRANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=449924 FOC73_RS02605 WP_002884363.1 581565..582650(-) (amiE) [Streptococcus salivarius strain FDAARGOS_771]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGGGTTTCCCTTGATTTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGTAAATCAGTTT
TGACTAAGACTTTCACAGGGATGCTTGAAGAAAATGGTCGTGTAGCTAGCGGTTCTATTGATTATCGTGGCCAAGATTTG
ACCAAACTTAAGAGTCACCAAGATTGGGCACCTATTCGTGGGGCTAAGATTGCGACTATCTTCCAAGATCCTATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGCCAAATTGTTGAAGTCATTGTCAAACACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGACTACATGGACAAGGTTGGTATTCCTGATGCTGAAAAACGTTTCAACGAATATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTCATTGCCATTGCCTTGGCTTGTCGTCCTGATGTCCTTATCTGTGACGAGCCAAC
AACTGCCCTTGACGTGACCATTCAAGCTCAAATCATTGACCTCTTGAAATCACTCAAAGAGGAGTATGGTTTCTCAGTGA
TTTTCATTACCCATGACCTTGGTGTGGTAGCAAGTATCGCTGACAAGGTTGCTGTTATGTATGCTGGTGAAATCATCGAG
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCACCCATACACGTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
TGACGATAAGGGTGAGCTTTTCTCAATTCCAGGGACACCACCATCACTTTATACACCAGTTGTTGGAGATGCCTTTGCCT
TGCGTTCAGACTATGCTATGCAAATTGACTTTGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCCAAAGTTGAAAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCGTGCTAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

99.723

100

0.997

  amiE Streptococcus thermophilus LMG 18311

96.953

100

0.97

  amiE Streptococcus thermophilus LMD-9

96.953

100

0.97

  oppD Streptococcus mutans UA159

54.441

96.676

0.526