Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FOC76_RS25980 Genome accession   NZ_CP053955
Coordinates   5065299..5067125 (-) Length   608 a.a.
NCBI ID   WP_000003386.1    Uniprot ID   -
Organism   Bacillus tropicus strain FDAARGOS_782     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 5060299..5072125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC76_RS25945 (FOC76_25945) - 5060726..5061523 (-) 798 WP_000673184.1 NAD kinase -
  FOC76_RS25950 (FOC76_25950) - 5061542..5062180 (-) 639 WP_001081482.1 GTP pyrophosphokinase family protein -
  FOC76_RS25955 (FOC76_25955) - 5062211..5062582 (-) 372 WP_001180001.1 hypothetical protein -
  FOC76_RS25960 (FOC76_25960) - 5062727..5063305 (+) 579 WP_000191127.1 CYTH domain-containing protein -
  FOC76_RS25965 (FOC76_25965) - 5063484..5063882 (+) 399 WP_000043380.1 hypothetical protein -
  FOC76_RS25970 (FOC76_25970) - 5063882..5064775 (+) 894 WP_000360642.1 ClpXP adapter SpxH family protein -
  FOC76_RS25975 (FOC76_25975) - 5065005..5065178 (+) 174 WP_000754593.1 hypothetical protein -
  FOC76_RS25980 (FOC76_25980) pepF 5065299..5067125 (-) 1827 WP_000003386.1 oligoendopeptidase F Regulator
  FOC76_RS25985 (FOC76_25985) - 5067176..5068420 (-) 1245 WP_000612259.1 competence protein CoiA -
  FOC76_RS25990 (FOC76_25990) - 5068501..5070045 (-) 1545 WP_000799205.1 cardiolipin synthase -
  FOC76_RS25995 (FOC76_25995) mecA 5070118..5070801 (-) 684 WP_000350711.1 adaptor protein MecA Regulator
  FOC76_RS26000 (FOC76_26000) - 5071142..5071816 (+) 675 WP_000362614.1 TerC family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70319.62 Da        Isoelectric Point: 4.6422

>NTDB_id=449454 FOC76_RS25980 WP_000003386.1 5065299..5067125(-) (pepF) [Bacillus tropicus strain FDAARGOS_782]
MSEQNTAKALPDRNEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHMIHKKVQ
EGYAVTPDMLTEIYYNLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=449454 FOC76_RS25980 WP_000003386.1 5065299..5067125(-) (pepF) [Bacillus tropicus strain FDAARGOS_782]
ATGTCTGAACAAAATACAGCAAAAGCATTACCAGATCGTAACGAGATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTTTTAA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACACGCCAACGTCCGCACGTATTATCTGAAGCG
GAAGAGGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTTCGTCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATCACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTGCGTGAAGATGCATTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAGCGTAATAATTTCAATGCGCGCGTTCGTAAATATGACTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATCCCTGAAGCGGTGTACGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCGCAAGACATGTTATTAAAGTCTTTACATGTACTTGGGGATGAGTATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCCTATG
GAACAAATCCTTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAATTTGGTCATTCT
GTGCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATACGGTGACTATTCAATCTTTGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGTTGCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCAGAGTTTGAGCATATGATTCATAAGAAAGTACAA
GAGGGATATGCGGTTACACCAGACATGTTAACGGAGATCTACTATAATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATTGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GATTTAGTGCAGCAACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCGGATTACCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAACCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCTTTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488