Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOC66_RS00335 Genome accession   NZ_CP053939
Coordinates   77370..78866 (-) Length   498 a.a.
NCBI ID   WP_003745532.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 72370..83866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS00310 (FOC66_00310) comE 73526..73813 (+) 288 WP_003747589.1 helix-hairpin-helix domain-containing protein Machinery gene
  FOC66_RS00315 (FOC66_00315) comP 73989..74483 (+) 495 WP_081456519.1 type IV pilin protein Machinery gene
  FOC66_RS00320 (FOC66_00320) - 74560..75384 (-) 825 WP_003745528.1 undecaprenyl-diphosphate phosphatase -
  FOC66_RS00325 (FOC66_00325) dsbA1 75429..76070 (-) 642 WP_003745530.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  FOC66_RS00330 (FOC66_00330) - 76082..77215 (-) 1134 WP_003745531.1 SPOR domain-containing protein -
  FOC66_RS00335 (FOC66_00335) comM 77370..78866 (-) 1497 WP_003745532.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOC66_RS00340 (FOC66_00340) - 78880..79200 (-) 321 WP_003745535.1 accessory factor UbiK family protein -
  FOC66_RS00345 (FOC66_00345) - 79325..80389 (-) 1065 WP_003745538.1 DUF1176 domain-containing protein -
  FOC66_RS00350 (FOC66_00350) metK 80557..81726 (-) 1170 WP_003745540.1 methionine adenosyltransferase -
  FOC66_RS00355 (FOC66_00355) - 82119..83000 (+) 882 WP_003745542.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53726.90 Da        Isoelectric Point: 8.1032

>NTDB_id=449236 FOC66_RS00335 WP_003745532.1 77370..78866(-) (comM) [Neisseria mucosa strain FDAARGOS_758]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQINPEKLAQYEFAGELALSGLLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGIAVYGARSL
GEVAAHLNGIEPLTQTECKLPQRPPEQSKIPDLADVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPESIARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSAAVLKRVTAARKIQYGRQGKVNAELSVSELDGKARIQKEAQEALGTMLEKLSLSARSFHRIMRVARTLADLAGD
EEVSKTHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=449236 FOC66_RS00335 WP_003745532.1 77370..78866(-) (comM) [Neisseria mucosa strain FDAARGOS_758]
ATGTCGCTTGCTTTGGTTTACAGCCGCGCCTTAAGCGGTATGAACGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCTTGCCACATTTCAATATCGTCGGTTTGCCCGATACTGAAGTCAAAGAAAGCCGCGACCGCGTGCGTGCCGCCATCA
TCCAAAGCGGCTTCGACTTCCCCGCCAAGAAAATTACCGTCAACCTCGCACCGGCCGACCTCCCCAAAGAATCCGGCCGT
TTCGATTTACCGATTGCCTTGGGCATTCTTGCCGCATCGGGACAAATTAATCCTGAAAAGCTCGCGCAATATGAGTTTGC
CGGAGAATTGGCGCTGTCCGGGCTGCTGCGTCCCGTACGCGGCGCGCTGGCCATGGCATGGCAGGGCATGCAGGCGGGAC
GTTCTTTCGTCTTGCCGCAAGAAAATGCCGAACAGGCTGCCGTCATGCGCGGTATCGCGGTTTATGGAGCGCGTTCTTTA
GGCGAAGTGGCCGCACATTTAAACGGTATCGAACCGTTGACACAAACCGAATGCAAACTGCCACAAAGGCCGCCTGAACA
AAGTAAAATACCCGACTTAGCTGATGTCAAAGGCCAACATACCGCCCGCCTCGCCTTGGAAATCGCCGCGGCAGGCGGAC
ACAGCCTACTGATGATGGGCCCTCCGGGAACGGGCAAATCCATGCTTTCGCAACGTTTGCCCGGTATCCTTCCGCCTTTG
ACCGAAGACGAATTGGTCGAAGTCTGGGCATTGCGTTCGCTCCTGCCCAATCATCAGCAACAACTCGACAGCAACCGCCC
TTTCCGCAGCCCCCACCACAGCGCCAGCTCGGCCGCCATGGTCGGCGGCGGTTCCGACCCGCGTCCGGGTGAAATTTCAT
TGGCGCACCATGGTGTGTTGTTTTTAGACGAATTGCCCGAGTTTGACCGTAAAGTATTGGAAGTATTGCGCGAACCTTTG
GAAAACGGCGAAATCCATATTTCCCGCGCCGCACGCCAAGCCGTTTATCCGGCTAAGTTCCAGCTCGTCGCCGCCATGAA
TCCCTGTCCTTGCGGCTATCTCGGTCATCCGTCCAAACCTTGCCGCTGCACGCCTGAAAGCATCGCCCGTTATCGAAGCA
AAATTTCAGGACCATTACTCGACCGCATTGATTTAACCATCGAAGTACCCAGCCTTTCCGCCGCCGAGCTGATGCAACAA
GAAGCCGGCGAATCCAGTGCCGCCGTATTAAAACGCGTTACCGCCGCGCGTAAAATCCAATACGGCCGACAAGGCAAGGT
TAATGCCGAATTGAGTGTCAGCGAACTCGATGGCAAAGCCCGTATCCAAAAAGAAGCGCAAGAAGCCTTGGGAACCATGC
TCGAAAAACTGTCCCTATCCGCACGAAGCTTCCACCGCATCATGCGCGTCGCCCGTACGCTGGCCGATTTGGCAGGCGAC
GAAGAAGTCAGTAAAACCCATGTGATGAAAGCCATCGGCTTCCGTCGCGCCCTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.082

100

0.536
  comM Vibrio campbellii strain DS40M4

51.911

99.799

0.518
  comM Haemophilus influenzae Rd KW20

49.699

100

0.498
  comM Glaesserella parasuis strain SC1401

49.102

100

0.494
  comM Legionella pneumophila str. Paris

47.327

100

0.48
  comM Legionella pneumophila strain ERS1305867

47.327

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.539

100

0.44