Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ST4067_RS02825 Genome accession   NZ_CP065496
Coordinates   522039..523775 (+) Length   578 a.a.
NCBI ID   WP_180481229.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4067     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 517039..528775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4067_RS02790 (ST4067_02775) - 517720..518031 (+) 312 WP_179966963.1 hypothetical protein -
  ST4067_RS02795 (ST4067_02780) - 518322..518516 (+) 195 WP_176243479.1 efflux RND transporter periplasmic adaptor subunit -
  ST4067_RS02800 - 518623..518784 (+) 162 WP_263604638.1 hypothetical protein -
  ST4067_RS02805 - 518830..519072 (+) 243 WP_011226964.1 ABC transporter permease -
  ST4067_RS09550 (ST4067_02790) - 519089..519337 (+) 249 WP_011226965.1 ABC transporter permease -
  ST4067_RS09555 (ST4067_02795) - 519334..519549 (+) 216 WP_023909476.1 ABC transporter permease -
  ST4067_RS02815 (ST4067_02800) rplJ 519839..520342 (+) 504 WP_011225635.1 50S ribosomal protein L10 -
  ST4067_RS02820 (ST4067_02805) rplL 520417..520785 (+) 369 WP_011225636.1 50S ribosomal protein L7/L12 -
  ST4067_RS02825 (ST4067_02810) rcrP 522039..523775 (+) 1737 WP_180481229.1 ABC transporter ATP-binding protein Regulator
  ST4067_RS02830 (ST4067_02815) rcrQ 523788..525575 (+) 1788 WP_263604639.1 ABC transporter ATP-binding protein Regulator
  ST4067_RS02835 (ST4067_02820) queA 525673..526716 (-) 1044 WP_263604640.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ST4067_RS02840 (ST4067_02825) - 526866..527567 (+) 702 WP_263604641.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64659.56 Da        Isoelectric Point: 5.7785

>NTDB_id=449236 ST4067_RS02825 WP_180481229.1 522039..523775(+) (rcrP) [Streptococcus thermophilus strain 4067]
MSYIWSYLRRYPKWLAMNFTAAILFVIANLGMPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLAYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQVLKVGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPLLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSSKLFKLTGLTE
PLFVQIIIAMIVAIVWFALNPLGSGALAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETDTKGYLEFDNVTFAYPGETESPVLHNISFKAKAGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=449236 ST4067_RS02825 WP_180481229.1 522039..523775(+) (rcrP) [Streptococcus thermophilus strain 4067]
ATGTCTTATATTTGGTCTTATCTCAGGCGTTACCCTAAGTGGCTAGCGATGAATTTTACAGCAGCCATTTTATTTGTTAT
TGCTAACCTGGGTATGCCGACGGTTCTTGCTAGAATGATTGATGAGGGCATTAACCGTGGGGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTTGGTGTGGTCTTAACTGGTATTGTTGGTCGTGTGCTTTTGGCCTATGCGGTTGGTAAGTTG
ACGACTACTATGGTGCAGGTCATGCGTAATGATATCTACGCCAAACTTCAGGAGTATTCACACCATGAGTACGAACAAAT
TGGGGTATCTTCTTTGGTGACTCGTATCACGTCGGATGCTTTTGTTCTCATGCAGTTTGCAGATCAAGTCCTCAAGGTGG
GTGTTATCACTCCTTTGATGATGGTTTCCAGTGTCTTTTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTGCCTTTACTAGCTGTAGTTGTCTGGTATGTGGCGGTAAAAACGCGTCCGCTTTCTGAAAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTCGCTAGAGAAGATTTCC
AAGAGAAGAAGTTTGCCTCTGAAAATGCTGTCTATGCGGATAATTCAAGCAAGCTCTTTAAATTGACTGGTTTAACAGAG
CCACTTTTTGTACAAATCATCATCGCTATGATTGTGGCTATTGTTTGGTTTGCCCTAAATCCATTAGGTTCTGGAGCTCT
GGCAATCGGGGACTTGGTTGCCTTCATTGAGTACAGTTTCCATGCACTATTATCCTTCCTCTTTCTAGCTAATCTCTTTA
CTATGTATCCTCGTACAGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCTATTTCTATCAACCCAAATGAA
GATGGGGTGACAGAGACTGATACTAAGGGATATTTGGAATTTGATAATGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTTCTACACAATATTTCTTTTAAGGCTAAGGCAGGTGAAACTATTGCCTTTATTGGGTCTACGGGCTCAGGAAAAT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTCACACTTGGACGTATTCTTGTGGATGGTGTGGATGTACGTGAC
TACAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCTCTACTCTTTACTGGAACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCTAGTCATGAAGAATTGAATCAAGCTACGGACGTGGCTCAGGCTAAGGAATTTATTG
AAAGCAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCGGTGGTTAAACGTCCTGATCTCTATATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACTTTGCGCCGTCGTCTAAAAGAAGTGACTCAGGATGCGACGGTCTTGATCGTGGCTCAACGTGTGGGAACCATTATGG
ATGCAGATCAGATTATCGTTCTTGATAAGGGTGAAATTGTTGGTCGTGGCCGTCACGAAGAGCTCATGGAAAGTAATGAG
ATTTACCGTGAGATTGCTAATTCACAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.189

91.696

0.369