Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   FOC66_RS00325 Genome accession   NZ_CP053939
Coordinates   75429..76070 (-) Length   213 a.a.
NCBI ID   WP_003745530.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 70429..81070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS00310 (FOC66_00310) comE 73526..73813 (+) 288 WP_003747589.1 helix-hairpin-helix domain-containing protein Machinery gene
  FOC66_RS00315 (FOC66_00315) comP 73989..74483 (+) 495 WP_081456519.1 type IV pilin protein Machinery gene
  FOC66_RS00320 (FOC66_00320) - 74560..75384 (-) 825 WP_003745528.1 undecaprenyl-diphosphate phosphatase -
  FOC66_RS00325 (FOC66_00325) dsbA1 75429..76070 (-) 642 WP_003745530.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  FOC66_RS00330 (FOC66_00330) - 76082..77215 (-) 1134 WP_003745531.1 SPOR domain-containing protein -
  FOC66_RS00335 (FOC66_00335) comM 77370..78866 (-) 1497 WP_003745532.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOC66_RS00340 (FOC66_00340) - 78880..79200 (-) 321 WP_003745535.1 accessory factor UbiK family protein -
  FOC66_RS00345 (FOC66_00345) - 79325..80389 (-) 1065 WP_003745538.1 DUF1176 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23814.59 Da        Isoelectric Point: 9.8951

>NTDB_id=449235 FOC66_RS00325 WP_003745530.1 75429..76070(-) (dsbA1) [Neisseria mucosa strain FDAARGOS_758]
MKQRMKQTIAALSLSLLSLSAQAATEGVDYTVLSRPIPQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFTKDVSLRT
EHVVWMPEMLGLAKVAAAVNLSGLKYQANPVIFKAVYEQKINLADANVFRTWVGKQTSFDSQKLLQAYNNPAATSAAAKM
QQLTETYRIENTPTVIVGGKYKVNFNGSDWKAGMKTIDELIIKVRREQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=449235 FOC66_RS00325 WP_003745530.1 75429..76070(-) (dsbA1) [Neisseria mucosa strain FDAARGOS_758]
ATGAAGCAGCGTATGAAACAAACTATTGCCGCACTCAGCCTGAGCCTGCTCAGTTTGAGTGCGCAGGCTGCTACTGAAGG
CGTGGACTATACCGTTCTTAGTCGCCCTATCCCGCAGCAGCAAGCCGGAAAAATTGAAGTGCTAGAATTTTTCGGCTACT
TCTGCGTCCATTGTTACCATCTCGATCCGGTTTTGTTGCAACACAGCAAAACCTTCACCAAAGATGTTTCCTTACGGACA
GAGCACGTCGTTTGGATGCCCGAAATGTTGGGCTTGGCCAAGGTAGCCGCTGCCGTCAATCTTTCAGGTTTGAAATATCA
GGCCAATCCAGTCATCTTCAAAGCCGTTTACGAACAGAAGATTAACTTGGCTGATGCAAATGTATTCCGCACATGGGTCG
GTAAACAGACGAGTTTTGACAGTCAAAAACTGCTTCAAGCCTACAACAACCCTGCCGCCACATCGGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATTGTCGGTGGCAAATACAAAGTCAATTTCAACGG
TAGCGACTGGAAAGCCGGTATGAAAACCATAGACGAGCTCATCATTAAAGTCCGCCGCGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

58.824

87.793

0.516
  dsbA2 Neisseria meningitidis MC58

58.47

85.915

0.502