Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   GGS_RS00665 Genome accession   NC_018712
Coordinates   116279..116707 (+) Length   142 a.a.
NCBI ID   WP_041788719.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 111279..121707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS00645 (GGS_0124) - 113622..113987 (+) 366 WP_003055257.1 DUF1033 family protein -
  GGS_RS00650 (GGS_0125) comGA/cglA 114068..115009 (+) 942 WP_015016543.1 competence type IV pilus ATPase ComGA Machinery gene
  GGS_RS00655 (GGS_0126) comGB 114945..115976 (+) 1032 WP_042357807.1 competence type IV pilus assembly protein ComGB Machinery gene
  GGS_RS00660 (GGS_0127) comGC 115978..116304 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  GGS_RS00665 (GGS_0128) comGD 116279..116707 (+) 429 WP_041788719.1 competence type IV pilus minor pilin ComGD Machinery gene
  GGS_RS00670 (GGS_0129) comGE 116715..116960 (+) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE Machinery gene
  GGS_RS00675 (GGS_0130) comGF 116941..117381 (+) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF Machinery gene
  GGS_RS00680 (GGS_0131) comGG 117410..117733 (+) 324 WP_227985720.1 competence type IV pilus minor pilin ComGG -
  GGS_RS00685 (GGS_0132) comGH 117796..118749 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  GGS_RS00690 (GGS_0133) - 118808..120004 (+) 1197 WP_003058485.1 acetate kinase -
  GGS_RS00695 - 120310..120516 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  GGS_RS00700 (GGS_0134) - 120619..121299 (+) 681 WP_003060329.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16428.92 Da        Isoelectric Point: 9.9660

>NTDB_id=44867 GGS_RS00665 WP_041788719.1 116279..116707(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MRLKNCNLKAFTMLESLLTLSVTSFIVLGLSVPVTSSYRRVQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQMLAA
EESLTIPDLIRVKNSQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=44867 GGS_RS00665 WP_041788719.1 116279..116707(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGAGACTCAAAAACTGCAACCTTAAAGCTTTCACAATGCTTGAAAGCTTATTAACGCTATCAGTAACAAGTTTTATTGT
CTTGGGGTTATCTGTGCCTGTGACAAGTAGTTATCGAAGGGTTCAGGAACAGCTTTTTTTCACTCGTTTTGAGCACTTTT
ATCGTCACCAACAAAAGTTGGCTATTTTGGAACATGATCAACGGGTTTTGACAATTTCTTCGAAACAAATGCTAGCGGCA
GAGGAGTCGTTAACAATACCTGACTTGATAAGGGTTAAGAATAGCCAGCAATTGGTTATTGATCAAATGGGAGGAAATCA
TTCTTTAGCAAAGATAATATTCGAGACGACTGATCAACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAA
AAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

43.382

95.775

0.415
  comGD Streptococcus mutans UA140

44.961

90.845

0.408
  comGD Streptococcus mutans UA159

44.961

90.845

0.408
  comGD/cglD Streptococcus mitis NCTC 12261

38.971

95.775

0.373

Multiple sequence alignment