Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   STAVA1121_RS08085 Genome accession   NZ_CP065488
Coordinates   1526166..1528256 (-) Length   696 a.a.
NCBI ID   WP_347131208.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA1121     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1521166..1533256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA1121_RS08060 (STAVA1121_07935) - 1522061..1522267 (-) 207 WP_347131206.1 bacteriocin class II family protein -
  STAVA1121_RS08065 (STAVA1121_07940) comE/blpR 1522518..1523249 (+) 732 WP_002948869.1 LytTR family DNA-binding domain-containing protein Regulator
  STAVA1121_RS08070 comD/blpH 1523786..1524589 (+) 804 WP_224103634.1 ATP-binding protein Regulator
  STAVA1121_RS08075 (STAVA1121_07950) - 1524607..1524768 (-) 162 WP_011226496.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  STAVA1121_RS08080 (STAVA1121_07955) comB 1524783..1526150 (-) 1368 WP_084829837.1 bacteriocin secretion accessory protein Regulator
  STAVA1121_RS08085 (STAVA1121_07960) comA/nlmT 1526166..1528256 (-) 2091 WP_347131208.1 peptide cleavage/export ABC transporter Regulator
  STAVA1121_RS08090 (STAVA1121_07965) - 1529332..1531077 (-) 1746 WP_347131210.1 ABC transporter ATP-binding protein -
  STAVA1121_RS08095 (STAVA1121_07970) - 1531070..1532827 (-) 1758 WP_347131211.1 ABC transporter transmembrane domain-containing protein -
  STAVA1121_RS08100 - 1533015..1533221 (-) 207 WP_002948879.1 hypothetical protein -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 78160.59 Da        Isoelectric Point: 6.5159

>NTDB_id=448562 STAVA1121_RS08085 WP_347131208.1 1526166..1528256(-) (comA/nlmT) [Streptococcus thermophilus strain AVA1121]
MASVAKYYGSDYSLAHLRELAKTNKEGTTALGLVEAAKKIGFETRAIKAEMSLFEMEDVPYPFIAHVNKDGKLQHYYVIY
KSTKDYLIIGDPDPSVKVTKMTKERFEKEWTGVTLFMGPEPSYKPHKDKKNGLWDFLPLIFKQRSLIANIVFASLLVTLI
NILGSYYLQGILDEYVPNQMKSTLGIISIGLVVTYVLQQMMTFARDYLLTILSQRLTIDVILSYIRHIFELPMSFFATRR
TGEVISRFSDANSIIDALASTILSLFLDFSIVIIVGGVLLIQNSNLFKLVLCSVPIYTLIVFAFMKPFERMNHDVMQSNA
MVNSAIIEDINGIETIKLLTSEEVCYQKIDGEFVDYLDNSFRLSKLSILQTSLKQGAQLILNVLILWTGAQLVMGNTISI
GQLITFNMLLSYFTNPLENIINLQTKLQSAKVANTRLNEVYLIESEFGQSDDTYQEGIADGDITVTDLSYKYGFGRDTLT
DVSLTIRQGEKISFVGVSGSGKTTLAKMLVNFYQPYKGHIDFNGQNISRIDKKTLRQHINYLPQQSYIFSGSVLENLTLG
VARGITQADILKACEIAEIRQDIENMPMGFQTELSDGAGLSGGQKQRIALARALLTKSPVLILDEATSGLDVLTEKQVID
NLLALKDKTIIFVAHRLSIAERTDRIVVIDQGRVVETGSHQDLMSYPGFYYQLFRK

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=448562 STAVA1121_RS08085 WP_347131208.1 1526166..1528256(-) (comA/nlmT) [Streptococcus thermophilus strain AVA1121]
TTGGCATCAGTGGCCAAGTACTATGGTTCAGATTATTCATTAGCACATCTGCGTGAGTTGGCGAAGACCAATAAAGAAGG
GACAACTGCCTTAGGTCTTGTAGAGGCTGCTAAAAAAATTGGCTTTGAAACGAGAGCTATAAAGGCTGAAATGTCGCTCT
TTGAGATGGAAGATGTTCCTTATCCTTTTATTGCTCATGTTAATAAAGATGGGAAGCTTCAACATTATTATGTTATTTAT
AAAAGCACCAAGGATTATCTGATAATTGGAGACCCTGATCCAAGTGTAAAAGTAACTAAAATGACTAAAGAGCGTTTTGA
GAAAGAGTGGACAGGTGTTACTCTTTTTATGGGACCGGAACCCAGTTATAAACCACATAAGGATAAGAAAAATGGACTCT
GGGACTTTCTCCCTTTGATCTTTAAACAAAGGTCCTTGATAGCTAATATTGTCTTTGCTAGTCTCTTGGTTACTTTAATA
AATATTTTAGGTTCCTATTATTTACAAGGTATTCTAGACGAATATGTCCCTAATCAAATGAAGTCTACCTTAGGAATTAT
CTCAATTGGATTAGTTGTGACCTATGTTTTACAACAAATGATGACTTTTGCAAGAGATTATCTCTTAACCATACTGAGTC
AGCGATTGACCATTGACGTTATCTTGTCCTACATACGACATATCTTTGAACTCCCAATGTCTTTTTTTGCCACAAGACGT
ACAGGGGAGGTTATCTCACGTTTTAGTGATGCTAACTCTATTATCGATGCTCTGGCTTCGACGATATTATCACTTTTCCT
TGATTTCTCTATTGTGATTATCGTAGGAGGCGTGTTATTGATACAAAATAGCAATCTCTTCAAGCTAGTTCTTTGTTCGG
TTCCAATTTATACCCTTATCGTCTTTGCCTTTATGAAACCTTTTGAGCGAATGAATCATGACGTCATGCAGAGTAATGCT
ATGGTTAATTCAGCCATCATTGAGGACATTAATGGGATTGAAACCATAAAGTTACTAACCAGCGAAGAAGTATGCTATCA
AAAGATTGATGGTGAGTTTGTTGACTATCTAGACAATTCTTTTCGCCTTTCTAAGTTATCTATACTACAAACATCATTGA
AACAAGGTGCTCAACTTATTTTAAATGTACTTATCCTCTGGACAGGTGCTCAGTTGGTGATGGGAAATACCATTTCGATA
GGACAATTGATTACTTTTAATATGTTGCTTTCCTACTTCACGAATCCTTTGGAAAATATCATTAACCTGCAAACCAAGTT
ACAGTCTGCTAAGGTAGCTAATACTAGGCTCAATGAGGTCTATCTGATTGAATCAGAGTTTGGACAAAGTGATGATACCT
ATCAAGAAGGCATTGCGGATGGAGATATCACTGTTACGGATTTATCTTATAAATATGGTTTTGGTCGTGATACTTTGACT
GATGTCAGTTTGACGATTAGACAAGGAGAAAAAATCAGTTTTGTTGGTGTCAGTGGATCTGGTAAGACTACTCTAGCTAA
AATGTTGGTCAATTTTTATCAACCATATAAGGGGCACATAGATTTTAATGGTCAAAATATTAGTCGCATAGACAAGAAAA
CTCTTCGTCAACATATTAACTATCTCCCTCAGCAATCCTATATATTTAGTGGTAGTGTTTTAGAAAATCTTACTTTAGGT
GTAGCACGGGGTATTACACAAGCTGATATTTTGAAAGCTTGTGAAATAGCAGAAATTCGTCAAGATATTGAAAACATGCC
TATGGGGTTTCAGACAGAGCTGTCTGATGGAGCAGGTCTGTCTGGAGGGCAAAAGCAACGTATCGCTTTGGCGCGTGCAC
TACTAACGAAATCTCCTGTACTAATCTTAGATGAAGCAACTAGCGGATTGGATGTTTTGACAGAAAAGCAGGTTATTGAT
AACCTCCTAGCACTAAAAGATAAAACGATCATCTTTGTAGCACACAGGCTTAGTATCGCTGAGCGGACCGACCGTATCGT
AGTCATTGATCAGGGACGCGTAGTGGAGACAGGTTCTCATCAAGACCTGATGTCTTATCCAGGTTTCTATTATCAATTAT
TTAGAAAGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(479-628)

ABC transporter transmembrane region (ABC_membrane)

(149-417)

Peptidase C39 family (Peptidase_C39)

(2-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

68.156

99.713

0.68
  comA Streptococcus mitis NCTC 12261

66.427

99.713

0.662
  comA Streptococcus pneumoniae Rx1

65.994

99.713

0.658
  comA Streptococcus pneumoniae D39

65.994

99.713

0.658
  comA Streptococcus pneumoniae R6

65.994

99.713

0.658
  comA Streptococcus mitis SK321

65.706

99.713

0.655
  comA Streptococcus pneumoniae TIGR4

65.562

99.713

0.654
  comA Streptococcus gordonii str. Challis substr. CH1

64.265

99.713

0.641