Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CHHT_RS03130 Genome accession   NZ_CP053827
Coordinates   582813..583187 (+) Length   124 a.a.
NCBI ID   WP_034962678.1    Uniprot ID   -
Organism   Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 14169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 577813..588187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHHT_RS03110 (CHHT_0619) - 578926..579738 (-) 813 WP_034962675.1 HDOD domain-containing protein -
  CHHT_RS03115 (CHHT_0620) ilvC 579888..580910 (+) 1023 WP_034962676.1 ketol-acid reductoisomerase -
  CHHT_RS03120 (CHHT_0621) - 580911..582059 (+) 1149 WP_051663747.1 divergent polysaccharide deacetylase family protein -
  CHHT_RS03125 (CHHT_0622) dprA 582043..582816 (+) 774 WP_034962677.1 DNA-processing protein DprA Machinery gene
  CHHT_RS03130 (CHHT_0623) dprB 582813..583187 (+) 375 WP_034962678.1 Holliday junction resolvase RuvX Machinery gene
  CHHT_RS03135 (CHHT_0624) - 583189..584058 (+) 870 WP_051663748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CHHT_RS03140 (CHHT_0625) - 584055..585227 (-) 1173 WP_051663749.1 hypothetical protein -
  CHHT_RS03145 (CHHT_0626) queA 585237..586271 (-) 1035 WP_034962679.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CHHT_RS03150 (CHHT_0627) tatC 586252..587010 (-) 759 WP_034962680.1 twin-arginine translocase subunit TatC -
  CHHT_RS03155 (CHHT_0628) tatB 587010..587447 (-) 438 WP_034962681.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13733.19 Da        Isoelectric Point: 10.1510

>NTDB_id=447956 CHHT_RS03130 WP_034962678.1 582813..583187(+) (dprB) [Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 14169]
MIVAIDVGLKRIGVAFAPNKVLVLPSEPILRKNRVQAANDTLKMLKEKNAKTLVVGLPKGGSSEDEMQRRIKHFISLVGF
DGEIIYQDEAYSSFEASALVKDKRDGKFDSIAAMIILKRYLGIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=447956 CHHT_RS03130 WP_034962678.1 582813..583187(+) (dprB) [Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 14169]
ATGATAGTCGCGATAGACGTTGGCTTAAAAAGAATAGGAGTCGCTTTTGCTCCTAACAAAGTTCTAGTTTTACCTAGTGA
GCCGATACTTCGTAAAAATCGTGTTCAAGCAGCAAATGACACTCTAAAAATGCTAAAAGAAAAAAACGCCAAAACGCTTG
TAGTGGGGCTTCCAAAAGGAGGATCTAGCGAAGATGAAATGCAAAGAAGAATAAAGCATTTTATATCGCTTGTTGGATTT
GATGGGGAGATAATATATCAAGATGAAGCGTATTCGAGTTTTGAAGCAAGTGCTTTGGTAAAAGATAAAAGAGACGGTAA
ATTTGATAGTATTGCCGCGATGATAATACTAAAAAGATATTTAGGGATTTTATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

48.462

100

0.508