Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CHHT_RS06005 Genome accession   NZ_CP053827
Coordinates   1147322..1148665 (+) Length   447 a.a.
NCBI ID   WP_059430776.1    Uniprot ID   A0A9W5F036
Organism   Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 14169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1142322..1153665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHHT_RS05975 (CHHT_1182) - 1142565..1143128 (-) 564 WP_034963891.1 DedA family protein -
  CHHT_RS05980 (CHHT_1183) - 1143137..1143730 (-) 594 WP_034963889.1 lipid-binding SYLF domain-containing protein -
  CHHT_RS05985 (CHHT_1184) rny 1143740..1145293 (-) 1554 WP_034963887.1 ribonuclease Y -
  CHHT_RS05990 (CHHT_1185) - 1145214..1145855 (-) 642 WP_034963885.1 5-formyltetrahydrofolate cyclo-ligase -
  CHHT_RS05995 (CHHT_1186) - 1145906..1146451 (+) 546 WP_034963884.1 TlpA disulfide reductase family protein -
  CHHT_RS06000 (CHHT_1187) ftsY 1146451..1147335 (+) 885 WP_059430777.1 signal recognition particle-docking protein FtsY -
  CHHT_RS06005 (CHHT_1188) radA 1147322..1148665 (+) 1344 WP_059430776.1 DNA repair protein RadA Machinery gene
  CHHT_RS09175 - 1149088..1149213 (-) 126 WP_255199053.1 hypothetical protein -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49033.70 Da        Isoelectric Point: 7.1363

>NTDB_id=447959 CHHT_RS06005 WP_059430776.1 1147322..1148665(+) (radA) [Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 14169]
MAKTKTIFECEACGNQQSKWMGKCPGCGAWESFVELSSEQIKVINEISKISNSPSSKAKAITDIKIEEISRRTTGDVELD
IVLGGGLVDGSLVLIGGSPGIGKSTLLLKIASNLAEFGENVLYVSGEESESQIKLRANRLNANSKNLYLLTEINLDNILA
EISKKEYKTLVVDSIQTLYSDKISSAPGSVSQVREITFELMRLAKSKNICVFIIGHITKEGSIAGPRILEHMVDVVLYFE
GDSSMELRLLRGFKNRFGSTSEVGIFEMSKFGLISAKDATSKFFTRGDAVSGSAITVTMEGSRALIVEIQALVCESSYPK
RSSTGFDKNRLDMILALLERKLEIPLGHYDVFINVTGGVKINETACDLAVVAAIISSFRNRPISKESIFIGELSLNGEIR
DIFNLDARLKEASMQKFKNIIAPSKPIEKSNLKIFVAKEISQVIEWM

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=447959 CHHT_RS06005 WP_059430776.1 1147322..1148665(+) (radA) [Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 14169]
ATGGCAAAAACTAAAACTATATTTGAGTGTGAAGCTTGCGGAAATCAACAGAGCAAATGGATGGGCAAATGTCCTGGATG
CGGGGCTTGGGAAAGCTTTGTGGAGCTTAGTAGCGAACAGATAAAAGTCATCAATGAAATCTCAAAGATAAGTAACTCTC
CTTCATCAAAAGCAAAAGCCATAACTGATATAAAAATAGAAGAAATTTCACGCCGCACTACAGGAGACGTTGAGCTTGAT
ATCGTTCTTGGCGGAGGCTTGGTAGATGGCTCACTTGTGCTTATCGGCGGAAGTCCAGGCATCGGAAAATCAACACTGCT
TTTAAAAATTGCTTCAAATTTGGCCGAATTTGGTGAAAATGTTTTATACGTAAGCGGGGAAGAAAGTGAGTCTCAAATAA
AGCTACGTGCAAACAGACTAAATGCGAACAGCAAAAATCTATATCTTTTAACAGAGATAAACTTAGACAATATCCTAGCA
GAAATCTCGAAAAAAGAGTATAAAACGCTAGTAGTGGATTCTATACAAACATTATATAGCGATAAAATAAGCTCAGCTCC
TGGTTCAGTTTCGCAAGTACGCGAGATAACTTTTGAGCTGATGAGGCTTGCAAAAAGTAAAAATATATGCGTGTTCATCA
TCGGACATATCACAAAAGAAGGCTCTATCGCCGGACCTAGAATTTTAGAGCATATGGTTGATGTCGTGCTGTATTTTGAA
GGCGATAGCAGTATGGAGCTCAGGCTTCTTAGGGGATTTAAAAATCGCTTTGGCTCAACTAGTGAAGTTGGGATTTTTGA
AATGAGCAAATTCGGTCTGATAAGCGCAAAAGACGCTACTAGCAAATTTTTTACTAGAGGAGACGCAGTGAGTGGCTCAG
CCATAACAGTCACGATGGAAGGAAGCCGCGCGCTTATAGTAGAGATCCAAGCTCTAGTTTGCGAGAGTAGCTATCCAAAA
AGAAGTTCCACTGGATTTGATAAAAATCGTCTGGATATGATACTTGCTTTATTGGAGCGAAAGCTTGAAATTCCCTTGGG
GCATTATGACGTTTTTATAAATGTTACTGGCGGAGTAAAGATAAATGAGACCGCATGCGATCTAGCTGTTGTAGCAGCTA
TCATATCGAGCTTTAGAAATCGCCCTATCAGCAAAGAAAGCATCTTTATAGGTGAGCTTAGCTTAAACGGAGAAATCAGA
GATATATTTAACCTTGATGCAAGGCTAAAAGAAGCCAGTATGCAAAAATTTAAAAATATAATAGCACCGAGCAAACCGAT
AGAAAAATCAAATTTAAAGATATTCGTCGCAAAAGAAATTTCACAAGTGATTGAATGGATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.348

96.421

0.485
  radA Streptococcus pneumoniae Rx1

46.756

100

0.468
  radA Streptococcus pneumoniae D39

46.756

100

0.468
  radA Streptococcus pneumoniae R6

46.756

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.756

100

0.468
  radA Streptococcus mitis SK321

47.183

95.302

0.45
  radA Streptococcus mitis NCTC 12261

46.948

95.302

0.447