Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CHHT_RS03125 Genome accession   NZ_CP053827
Coordinates   582043..582816 (+) Length   257 a.a.
NCBI ID   WP_034962677.1    Uniprot ID   A0A855NAW3
Organism   Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 14169     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 577043..587816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHHT_RS03110 (CHHT_0619) - 578926..579738 (-) 813 WP_034962675.1 HDOD domain-containing protein -
  CHHT_RS03115 (CHHT_0620) ilvC 579888..580910 (+) 1023 WP_034962676.1 ketol-acid reductoisomerase -
  CHHT_RS03120 (CHHT_0621) - 580911..582059 (+) 1149 WP_051663747.1 divergent polysaccharide deacetylase family protein -
  CHHT_RS03125 (CHHT_0622) dprA 582043..582816 (+) 774 WP_034962677.1 DNA-processing protein DprA Machinery gene
  CHHT_RS03130 (CHHT_0623) dprB 582813..583187 (+) 375 WP_034962678.1 Holliday junction resolvase RuvX Machinery gene
  CHHT_RS03135 (CHHT_0624) - 583189..584058 (+) 870 WP_051663748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CHHT_RS03140 (CHHT_0625) - 584055..585227 (-) 1173 WP_051663749.1 hypothetical protein -
  CHHT_RS03145 (CHHT_0626) queA 585237..586271 (-) 1035 WP_034962679.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CHHT_RS03150 (CHHT_0627) tatC 586252..587010 (-) 759 WP_034962680.1 twin-arginine translocase subunit TatC -
  CHHT_RS03155 (CHHT_0628) tatB 587010..587447 (-) 438 WP_034962681.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28590.07 Da        Isoelectric Point: 5.7900

>NTDB_id=447955 CHHT_RS03125 WP_034962677.1 582043..582816(+) (dprA) [Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 14169]
MDFITEIPTSLKLLKKPVDKLYYKGDLRLLDFPKIAIVGSRKCSQYTKNLVYSLALILKNHGICVVSGAAIGTDCVAHVG
AYPHTIAVFGNGLENIYPAQNKKIIEQIYKNSLALSEYEPSFIATPWSFLERNRIVVALSDAVVVGEADLKSGSMSSARL
ALDMNIPLFVLPQRLGESNGTNELLKNKKAELITDFDEFALLFKSEKTSVQSGDEVLSFIKTNSNFDECYAKFGDILYEY
ELDGKIVIDGIYIRILQ

Nucleotide


Download         Length: 774 bp        

>NTDB_id=447955 CHHT_RS03125 WP_034962677.1 582043..582816(+) (dprA) [Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 14169]
ATGGACTTTATAACTGAAATTCCAACCAGTCTAAAATTACTCAAAAAACCAGTAGATAAACTTTACTATAAAGGTGATCT
TCGGCTTTTAGACTTTCCAAAAATTGCTATAGTTGGTTCAAGAAAATGTTCGCAATACACTAAAAATTTAGTTTATAGCC
TAGCTCTTATTCTTAAAAATCATGGTATCTGTGTTGTTAGTGGAGCGGCGATCGGTACTGACTGCGTTGCTCACGTCGGA
GCCTATCCTCATACCATAGCAGTTTTTGGCAACGGACTTGAAAATATCTATCCTGCTCAAAATAAAAAAATAATAGAACA
AATTTATAAAAACTCACTTGCTCTAAGCGAGTATGAGCCAAGTTTTATAGCAACTCCTTGGAGCTTTTTAGAGCGAAATC
GCATCGTAGTAGCTTTAAGTGACGCGGTCGTTGTAGGCGAAGCTGATTTAAAAAGTGGTTCTATGAGTAGCGCCAGACTT
GCTTTAGATATGAATATACCTTTATTTGTGCTTCCTCAACGCCTAGGTGAAAGCAATGGGACAAATGAGCTTTTAAAAAA
TAAAAAAGCTGAGCTAATCACTGATTTTGATGAATTCGCGCTTTTGTTTAAGAGTGAAAAAACATCTGTACAAAGCGGTG
ATGAGGTACTAAGCTTTATAAAAACTAACTCAAATTTCGATGAATGCTATGCTAAATTTGGCGATATTTTATATGAATAC
GAGCTTGATGGTAAAATCGTAATAGATGGCATTTACATAAGGATTTTACAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855NAW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.78

91.829

0.521
  dprA Helicobacter pylori 26695

48.178

96.109

0.463
  dprA Legionella pneumophila strain ERS1305867

35.055

100

0.37