Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   HPY13_RS08625 Genome accession   NZ_CP053796
Coordinates   1901749..1902336 (-) Length   195 a.a.
NCBI ID   WP_001005365.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL4G     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1896749..1907336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS08605 (HPY13_08610) - 1896977..1898242 (-) 1266 WP_175249785.1 YdgA family protein -
  HPY13_RS08610 (HPY13_08615) - 1898465..1900420 (+) 1956 WP_108243829.1 ATP-binding protein -
  HPY13_RS08615 (HPY13_08620) - 1900417..1900914 (+) 498 WP_001031964.1 response regulator -
  HPY13_RS08620 (HPY13_08625) - 1901105..1901653 (+) 549 WP_108243830.1 hypothetical protein -
  HPY13_RS08625 (HPY13_08630) tfoX 1901749..1902336 (-) 588 WP_001005365.1 TfoX/Sxy family DNA transformation protein Regulator
  HPY13_RS08630 (HPY13_08635) - 1902714..1903634 (+) 921 WP_000019000.1 HDOD domain-containing protein -
  HPY13_RS08635 (HPY13_08640) - 1903655..1904560 (+) 906 WP_108243831.1 lysine exporter LysO family protein -
  HPY13_RS08640 (HPY13_08645) - 1904749..1905258 (+) 510 WP_000826868.1 hypothetical protein -
  HPY13_RS08645 (HPY13_08650) panP 1905368..1907014 (+) 1647 WP_000253198.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22817.01 Da        Isoelectric Point: 6.6463

>NTDB_id=447374 HPY13_RS08625 WP_001005365.1 1901749..1902336(-) (tfoX) [Vibrio cholerae strain SL4G]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCEQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=447374 HPY13_RS08625 WP_001005365.1 1901749..1902336(-) (tfoX) [Vibrio cholerae strain SL4G]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGTATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCTTGGGTGCGCCAGAAGTGTTTAATAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGCATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGCGAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

99.487

100

0.995
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

99.487

100

0.995
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

99.487

100

0.995
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

99.487

100

0.995
  tfoX Vibrio cholerae strain A1552

99.487

100

0.995
  tfoX Vibrio campbellii strain DS40M4

69.948

98.974

0.692
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.912

98.974

0.682
  tfoX Aliivibrio fischeri ES114

59.043

96.41

0.569