Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RGE_RS01235 Genome accession   NC_017075
Coordinates   262615..264144 (+) Length   509 a.a.
NCBI ID   WP_014426487.1    Uniprot ID   I0HKR1
Organism   Rubrivivax gelatinosus IL144     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 257615..269144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGE_RS01220 (RGE_02490) gshA 258883..260178 (-) 1296 WP_014426483.1 glutamate--cysteine ligase -
  RGE_RS01225 (RGE_02500) - 260322..261836 (-) 1515 WP_014426484.1 ammonium transporter -
  RGE_RS01230 (RGE_02510) - 261875..262213 (-) 339 WP_014426485.1 P-II family nitrogen regulator -
  RGE_RS01235 (RGE_02530) comM 262615..264144 (+) 1530 WP_014426487.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RGE_RS01240 (RGE_02540) metH 264149..266872 (-) 2724 WP_014426488.1 methionine synthase -
  RGE_RS01245 (RGE_02550) - 266993..268903 (-) 1911 WP_014426489.1 glucokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 52333.97 Da        Isoelectric Point: 7.8944

>NTDB_id=44732 RGE_RS01235 WP_014426487.1 262615..264144(+) (comM) [Rubrivivax gelatinosus IL144]
MSLAVVASRALDGLDAPAVHVEVQLANGLPCFTLVGLADTEVKESRERVRAALQHSGFQFPHNKRITVNLAPADLPKESG
RFDLPIALGILAADGVLDAARLAACEFAGELSLAGELRPVRGALALALAARRDGGGRTLVLPAASAGSAARVGGLDVRGA
ATLLEVVQALLPGEAAEPLSPARPPPAEPGEPAPDLRDVRGQAAAKRALEIAAAGAHSLLLVGPPGTGKSMLAARLPGLL
PAMDDEEALVSAALQGLAPQALDGAGFGRRPVRSPHHSASAVALVGGGSPPRPGEISLAHGGVLFLDELPEFARAALEAL
REPLETGRVTISRAARQAQFPARFQLVAAMNPCPCGWLGAFAATGRACRCGADGVARYRSRLSGPLLDRIDLQIEVPAVR
PAELMGAPSGESSAAVAARVAAARSRQLDRQGEPNGRLGAADTDRCCVAEAAARRLLQTAAEKLGWSGRRLHRTLRVART
IADLDGAATIGVTTMAEALQLQRGLDAAD

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=44732 RGE_RS01235 WP_014426487.1 262615..264144(+) (comM) [Rubrivivax gelatinosus IL144]
ATGAGCTTGGCGGTGGTGGCGAGCCGTGCGCTCGACGGGCTGGACGCGCCGGCGGTGCACGTCGAGGTGCAGCTCGCCAA
CGGTTTGCCGTGTTTCACGCTCGTCGGCCTCGCGGATACCGAAGTCAAGGAATCGCGCGAGCGCGTGCGCGCGGCGCTGC
AGCACAGCGGCTTCCAGTTCCCGCACAACAAACGCATCACGGTCAACCTGGCGCCGGCCGACCTGCCCAAGGAGTCGGGG
CGTTTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCCGACGGCGTGCTCGACGCCGCCCGGCTGGCGGCCTGCGAGTT
CGCCGGCGAGCTGTCGCTGGCCGGCGAGCTTCGCCCGGTGCGCGGCGCGCTGGCCCTGGCGCTGGCCGCGCGCCGCGACG
GCGGCGGCCGCACGCTGGTGCTGCCGGCGGCCAGCGCCGGCAGCGCGGCCCGGGTCGGCGGGCTGGACGTGCGCGGTGCG
GCGACGCTGCTCGAGGTCGTGCAGGCGCTGCTGCCCGGCGAAGCCGCCGAGCCGCTGTCTCCGGCACGGCCGCCGCCGGC
CGAGCCCGGCGAGCCGGCGCCCGACCTGCGCGACGTGCGCGGCCAGGCGGCGGCCAAGCGGGCGCTGGAGATCGCCGCCG
CGGGCGCGCACTCGCTTCTGCTCGTCGGCCCGCCCGGCACCGGCAAGTCGATGCTCGCCGCGCGCCTGCCCGGGCTGCTG
CCGGCGATGGACGACGAGGAGGCGCTGGTCAGCGCCGCGCTGCAAGGGCTGGCGCCGCAGGCCCTGGACGGCGCCGGCTT
CGGCCGCCGGCCGGTGCGTTCGCCCCACCACAGTGCGAGTGCGGTGGCGCTGGTCGGCGGCGGTTCGCCGCCGCGGCCGG
GCGAGATCTCGCTGGCGCACGGCGGCGTGCTGTTCCTCGACGAGCTGCCCGAGTTCGCGCGCGCCGCGCTGGAGGCGCTG
CGTGAACCGCTGGAGACCGGCCGGGTGACGATCTCGCGCGCCGCGCGCCAGGCGCAGTTCCCGGCGCGCTTCCAGCTCGT
CGCGGCGATGAACCCCTGTCCCTGCGGCTGGCTGGGCGCTTTCGCCGCCACCGGCCGCGCCTGCCGCTGCGGCGCCGACG
GCGTGGCGCGTTACCGCAGCCGGCTGTCGGGGCCGCTGCTCGACCGCATCGACCTGCAGATCGAGGTGCCGGCGGTGCGC
CCGGCCGAGCTGATGGGCGCTCCCAGCGGCGAGAGCTCGGCGGCGGTGGCGGCGCGGGTGGCGGCCGCACGCTCGCGCCA
GCTCGACCGCCAGGGCGAGCCCAACGGCCGCCTCGGCGCGGCCGACACCGACCGCTGCTGCGTCGCCGAGGCCGCCGCGC
GGCGCCTGCTGCAGACCGCGGCCGAGAAGCTGGGCTGGTCGGGCCGGCGCCTGCACCGCACGCTGCGCGTCGCGCGCACG
ATCGCCGACCTGGACGGCGCCGCGACGATCGGCGTCACCACGATGGCCGAGGCGCTGCAGCTGCAGCGCGGGCTCGACGC
CGCGGACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-403)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0HKR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.4

98.232

0.515
  comM Vibrio campbellii strain DS40M4

51.6

98.232

0.507
  comM Haemophilus influenzae Rd KW20

51.093

98.821

0.505
  comM Glaesserella parasuis strain SC1401

48.425

99.804

0.483
  comM Legionella pneumophila str. Paris

45.759

99.607

0.456
  comM Legionella pneumophila strain ERS1305867

45.759

99.607

0.456
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.802

100

0.432

Multiple sequence alignment