Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GE023_RS01910 Genome accession   NZ_CP053789
Coordinates   356331..358310 (+) Length   659 a.a.
NCBI ID   WP_093999416.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 351331..363310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS01890 (GE023_001890) sufB 351550..352968 (+) 1419 WP_003046659.1 Fe-S cluster assembly protein SufB -
  GE023_RS01900 (GE023_001900) - 353405..354586 (-) 1182 WP_172756875.1 D-alanyl-D-alanine carboxypeptidase family protein -
  GE023_RS01905 (GE023_001905) pbp3 354762..356000 (-) 1239 WP_159305807.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  GE023_RS01910 (GE023_001910) amiA 356331..358310 (+) 1980 WP_093999416.1 peptide ABC transporter substrate-binding protein Regulator
  GE023_RS01915 (GE023_001915) amiC 358376..359878 (+) 1503 WP_003046676.1 ABC transporter permease Regulator
  GE023_RS01920 (GE023_001920) amiD 359878..360804 (+) 927 WP_093999415.1 oligopeptide ABC transporter permease OppC Regulator
  GE023_RS01925 (GE023_001925) amiE 360813..361883 (+) 1071 WP_159305249.1 ABC transporter ATP-binding protein Regulator
  GE023_RS01930 (GE023_001930) amiF 361876..362799 (+) 924 WP_093999413.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72431.80 Da        Isoelectric Point: 4.9490

>NTDB_id=447147 GE023_RS01910 WP_093999416.1 356331..358310(+) (amiA) [Streptococcus canis strain HL_98_2]
MKKSKWLATLGVAVLSVSVLAACGSKNASGGSDATKTYKYVFVNDPKSLDYILSNGGGTTDVATQMVDGLLENDKYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAVDGKSEALYVVEDSIKNLKAYKNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNEKFLKSQGKDFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFTVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKDLATMGDEWKDVN
LDDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVIVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVDGGSVIQKLGIKAGESKDVVAAAGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVTKAVPFSGAFAWAGAKGPASVYYYKGMKLQDKPVTAKQYEKAKEKWLK
AKAKSNAEYAEKLADHVEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=447147 GE023_RS01910 WP_093999416.1 356331..358310(+) (amiA) [Streptococcus canis strain HL_98_2]
ATGAAGAAAAGTAAATGGTTAGCAACTCTAGGTGTTGCCGTATTATCAGTATCTGTCTTAGCAGCCTGCGGTAGTAAAAA
TGCTTCAGGTGGTTCAGATGCGACAAAAACGTACAAATATGTTTTTGTTAATGATCCAAAATCATTGGACTATATTTTGT
CTAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTCGATGGTCTTTTGGAAAATGACAAGTATGGTAACTTGGTA
CCATCACTTGCTAAAGATTGGAAAGTTTCAAAAGATGGCCTAACCTATACTTACACCCTTCGTGATGGTGTCTCTTGGTA
CACTGCTGATGGTGAAGAATATGCACCTGTAACAGCAGAAGATTTTGTGACTGGTCTTAAACACGCAGTGGATGGCAAGT
CTGAAGCCTTATATGTTGTTGAAGATTCCATCAAAAACCTAAAAGCTTATAAAAATGGTGAAGTCGATTTCAAAGAGGTT
GGTGTTAAAGCCCTTGACGACAAAACCGTTCAATACACCTTGAACAAACCTGAAAGTTATTGGAACTCCAAAACAACTTA
CAGTGTTCTTTTCCCAGTCAATGAAAAATTCTTGAAATCACAAGGTAAAGATTTTGGAACAACAGACCCATCGTCAATCC
TAGTTAATGGTGCTTACTTCTTGAGTGCCTTCACCTCAAAATCATCTATGGAATTTCATAAAAATGAAAACTACTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGCTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCACTGTTGCACGACTTTATCCAAATGACCCTACTTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTATGGCATGTTGACTGGTGATATTCGTCATTTAACATGGAACTTGAACCGTACTTCCTTCAAAAACACTAAGAAA
GACCCTGCACAACAAGATGCTGGTAAGAAAGCTCTTAACAACAAGGACTTCCGTCAAGCTATCCAGTTTGCCTTCGACCG
TGCGTCATTCCAAGCACAAACTGCAGGTCAAGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACAATTGGGGAAAATGACTTTGGTTCAGAAGTTGAAAAAGACCTTGCTACTATGGGTGATGAGTGGAAAGACGTTAAC
TTAGACGATGCTCAAGATGGATTTTATAATCCAGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTCTTACAGC
TGAAGGGGTAACCTTCCCAGTTCAATTAGATTACCCTGTTGACCAAGCAAACGCAGCAACTGTTCAGGAAGCCCAATCTT
TCAAACAATCCGTTGAAGCATCTCTTGGTAAAGAAAATGTCATTGTCAATGTTCTTGAAACAGAAACCTCAACTCACGAA
GCCCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGACATCATTTCATCATGGTGGGGTCCAGACTACCAAGA
CCCACGTACCTACCTTGATATCATGAGTCCAGTGGATGGTGGATCTGTTATCCAAAAACTTGGAATTAAAGCAGGTGAAA
GCAAAGATGTTGTGGCAGCTGCAGGCCTTGATACCTACCAAACTTTACTTGATGAAGCAGCAGCGATTACAGACGACAAC
GATGCGCGCTACAAGGCTTACGCAAAAGCACAAGCCTACCTTACTGATAGTGCTGTAGATATTCCAGTTGTGGCATTGGG
TGGCACTCCTCGAGTTACTAAAGCTGTTCCATTTAGCGGTGCCTTTGCCTGGGCAGGTGCTAAAGGTCCTGCTTCTGTAT
ATTATTACAAAGGAATGAAACTTCAAGACAAACCTGTCACAGCAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAA
GCAAAGGCTAAGTCAAACGCAGAATATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

51.282

100

0.516
  amiA3 Streptococcus thermophilus LMG 18311

50.679

100

0.51
  amiA3 Streptococcus thermophilus LMD-9

50.377

100

0.507