Detailed information NTG0447151

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: I5W22_RS10420
• Genome accession: NZ_CP065431
• Coordinates: 2130921..2132015 (+)
• Length: 364 a.a.
• NCBI ID: WP_012028050.1
• Uniprot ID: A0A0H3N2H6
• Organism: Streptococcus suis strain YP20190405
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2125921..2137015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5W22_RS10395 (I5W22_10395)	pgsA	2126440..2126979 (-)	540	WP_012028045.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
I5W22_RS10400 (I5W22_10400)	rodZ	2126989..2127846 (-)	858	WP_012028600.1	cytoskeleton protein RodZ	-
I5W22_RS10405 (I5W22_10405)	yfmH	2127928..2129211 (-)	1284	WP_012775413.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
I5W22_RS10410 (I5W22_10410)	yfmF	2129208..2130461 (-)	1254	WP_012028048.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
I5W22_RS10415 (I5W22_10415)	yaaA	2130535..2130918 (+)	384	WP_012028049.1	S4 domain-containing protein YaaA	-
I5W22_RS10420 (I5W22_10420)	recF	2130921..2132015 (+)	1095	WP_012028050.1	DNA replication/repair protein RecF	Machinery gene
I5W22_RS10425 (I5W22_10425)	guaB	2132287..2133768 (-)	1482	WP_012028051.1	IMP dehydrogenase	-
I5W22_RS10430 (I5W22_10430)	trpS	2134000..2135025 (-)	1026	WP_012775414.1	tryptophan--tRNA ligase	-
I5W22_RS10435 (I5W22_10435)	-	2135380..2136252 (+)	873	WP_012775460.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42188.24 Da
• Isoelectric Point: 6.9173

>NTDB_id=447151 I5W22_RS10420 WP_012028050.1 2130921..2132015(+) (recF) [Streptococcus suis strain YP20190405]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=447151 I5W22_RS10420 WP_012028050.1 2130921..2132015(+) (recF) [Streptococcus suis strain YP20190405]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: A0A0H3N2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.36	99.176	0.698
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442